public static Dictionary <String, Boolean> assessProteinIdentificationConfidence(List <Protein> proteins, SupportVectorMachine <Gaussian> svmModel)
{
//transform basic features to crossed features
IDataView transformedData = ProteinListToTransformedData(proteins);
//pass features into the classifier
bool[] identificationPredictions = IdentificationLogisticRegressionTrainer.SVMDecide(svmModel, transformedData);
// Collect the protein accession and the identification prediction
Dictionary <String, Boolean> predictions = JoinAccessionWithPrediction(proteins, identificationPredictions);
return(predictions);
}
public static Dictionary <String, Boolean> assessProteinIdentificationConfidence(List <Protein> proteins, LogisticRegression lrModel)
{
//transform basic features to crossed features
IDataView transformedData = ProteinListToTransformedData(proteins);
//pass features into the classifier
bool[] identificationPredictions = IdentificationLogisticRegressionTrainer.AccordDecide(lrModel, transformedData, GlobalVar.AccordThreshold);
// Collect the protein accession and the identification prediction
Dictionary <String, Boolean> predictions = JoinAccessionWithPrediction(proteins, identificationPredictions);
return(predictions);
}
