public SDTMloader(IServiceUoW uoW)
{
_dataServiceUnit = uoW;
_datasetRepository = uoW.GetRepository <Dataset, int>();
_dataFileRepository = uoW.GetRepository <DataFile, int>();
_sdtmRepository = uoW.GetRepository <SdtmRow, Guid>();
}
public SubjectService(IServiceUoW uoW)
{
_dataContext = uoW;
_subjectRepository = uoW.GetRepository <HumanSubject, string>();
_studtRepository = uoW.GetRepository <Study, int>();
_characteristicObjRepository = uoW.GetRepository <CharacteristicFeature, int>();
}
public CheckoutService(IServiceUoW uoW, QueryService queryService)
{
_dataContext = uoW;
_combinedQueryRepository = uoW.GetRepository <CombinedQuery, Guid>();
_userDatasetRepository = uoW.GetRepository <UserDataset, Guid>();
_queryService = queryService;
}
public HDloader(IServiceUoW uoW)
{
_dataContext = uoW;
_datasetRepository = uoW.GetRepository <Dataset, int>();
_dataFileRepository = uoW.GetRepository <DataFile, int>();
_observationRepository = uoW.GetRepository <Observation, Guid>();
}
public AssayService(IServiceUoW uoW, DatasetService datasetService)
{
_dataContext = uoW;
_bioSampleRepository = uoW.GetRepository <Biosample, int>();
_projectRepository = uoW.GetRepository <Project, int>();
_assayRepository = uoW.GetRepository <Assay, int>();
_datasetService = datasetService;
}
public CheckoutService(IServiceUoW uoW, QueryService queryService)
{
_dataContext = uoW;
_combinedQueryRepository = uoW.GetRepository <CombinedQuery, Guid>();
_exportFileRepository = uoW.GetRepository <ExportFile, Guid>();
_analysisDatasetRepository = uoW.GetRepository <AnalysisDataset, Guid>();
_queryService = queryService;
}
public BioSampleService(IServiceUoW uoW)
{
_dataContext = uoW;
_bioSampleRepository = uoW.GetRepository <Biosample, int>();
_datasetRepository = uoW.GetRepository <Dataset, int>();
_studyRepository = uoW.GetRepository <Study, int>();
_characteristicObjRepository = uoW.GetRepository <CharacteristicFeature, int>();
}
public DbInitializer(IServiceUoW uoW, IOptions <DataAccessSettings> settings)
{
_db = uoW;
_desriptorRepository = uoW.GetRepository <DatasetTemplate, string>();
_dictRepository = uoW.GetRepository <Dictionary, string>();
_ConfigSettings = settings.Value;
_JSONDir = _ConfigSettings.DBinitDirectory;
Directory.CreateDirectory(_JSONDir);
}
public DataMatrixLoader(IServiceUoW uoW, FileService fileService)
{
_dataContext = uoW;
_observationRepository = uoW.GetRepository <Observation, Guid>();
_biosampleRepository = uoW.GetRepository <Biosample, int>();
_dataFileRepository = uoW.GetRepository <DataFile, int>();
_datasetRepository = uoW.GetRepository <Dataset, int>();
_fileService = fileService;
}
public DatasetService(IServiceUoW uoW, CacheService cacheService)
{
_dataServiceUnit = uoW;
_datasetRepository = uoW.GetRepository <Dataset, int>();
_dataFileRepository = uoW.GetRepository <DataFile, int>();
_observationRepository = uoW.GetRepository <Observation, int>();
_sdtmRepository = uoW.GetRepository <SdtmRow, Guid>();
_variableDefinitionRepository = uoW.GetRepository <VariableDefinition, int>();
_cacheService = cacheService;
}
public FileService(IServiceUoW uoW, IOptions <FileStorageSettings> settings)
{
_dataServiceUnit = uoW;
_fileRepository = uoW.GetRepository <DataFile, int>();
_projectRepository = uoW.GetRepository <Project, int>();
_datasetRepository = uoW.GetRepository <Dataset, int>();
ConfigSettings = settings.Value;
_uploadFileDirectory = ConfigSettings.UploadFileDirectory;
_downloadFileDirectory = ConfigSettings.DownloadFileDirectory;
_observationRepository = uoW.GetRepository <Observation, int>();
}
public void LoadDictionaries()
{
var reader = File.OpenText(Path.Combine(_JSONDir, _termsJSONfilename));
List <Dictionary> dicts = JsonConvert.DeserializeObject <List <Dictionary> >(reader.ReadToEnd());
_dictRepository = _db.GetRepository <Dictionary, string>();
_dictRepository.InsertMany(dicts);
_db.Save();
reader.Dispose();
}
//MongoDB Repositories
//private IRepository<HumanSubject, string> subjectRepository;
//private IRepository<Study, int> _studyRepository;
public ObservationService(IServiceUoW uoW)
{
_dataContext = uoW;
//_activityRepository = uoW.GetRepository<Activity, int>();
_ObservationRepository = uoW.GetRepository <Observation, int>();
//_datasetRepository = uoW.GetRepository<Dataset, int>();
//_variableRepository = uoW.GetRepository<VariableDefinition, int>();
//subjectRepository = uoW.GetRepository<HumanSubject, string>();
//_studyRepository = uoW.GetRepository<Study, int>();
//_O3Repository = uoW.GetRepository<ObjectOfObservation, int>();
//_ObsDescriptionRepository = uoW.GetRepository<ObservationDescriptor, int>();
//_ObsDescriptorRepository = uoW.GetRepository<PropertyDescriptor, int>();
_sdtmRepository = uoW.GetRepository <SdtmRow, Guid>();
}
public ExportService(IServiceUoW uoW, QueryService queryService, IOptions <FileStorageSettings> settings)
{
_exportFileRepository = uoW.GetRepository <ExportFile, Guid>();
_queryService = queryService;
_dataServiceUnit = uoW;
ConfigSettings = settings.Value;
_downloadFileDirectory = ConfigSettings.DownloadFileDirectory;
}
public ProjectService(IServiceUoW uoW)
{
this.uoW = uoW;
_projectRepository = uoW.GetRepository <Project, int>();
_userDatasetRepository = uoW.GetRepository <UserDataset, Guid>();
_activityRepository = uoW.GetRepository <Activity, int>();
_assayRepository = uoW.GetRepository <Assay, int>();
_combinedQueryRepository = uoW.GetRepository <CombinedQuery, Guid>();
_sdtmRepository = uoW.GetRepository <SdtmRow, Guid>();
}
public BioSampleLoader(IServiceUoW uoW)
{
_dataContext = uoW;
_bioSampleRepository = uoW.GetRepository <Biosample, int>();
_subjectRepository = uoW.GetRepository <HumanSubject, string>();
_studyRepository = uoW.GetRepository <Study, int>();
_assayRepository = uoW.GetRepository <Assay, int>();
_sdtmRepository = uoW.GetRepository <SdtmRow, Guid>();
_characteristicObjRepository = uoW.GetRepository <CharacteristicFeature, int>();
}
public CVtermService(IServiceUoW uoW)
{
_CVrepository = uoW.GetRepository <CVterm, string>();
}
public UserDatasetService(IServiceUoW uoW)
{
_unitOfWork = uoW;
_userDatasetRepository = uoW.GetRepository <UserDataset, Guid>();
_projectRepository = uoW.GetRepository <Project, int>();
}
public TemplateService(IServiceUoW uoW)
{
_dataServiceUnit = uoW;
_templateRepository = uoW.GetRepository <DatasetTemplate, string>();
}
public StudyService(IServiceUoW uoW)
{
_studyServiceUnit = uoW;
_studyRepository = _studyServiceUnit.GetRepository <Study, int>();
_projectRepository = uoW.GetRepository <Project, int>();
}
public ObservationLoader(IServiceUoW uoW)
{
_dataContext = uoW;
_observationRepository = uoW.GetRepository <Observation, int>();
_sdtmRepository = uoW.GetRepository <SdtmRow, Guid>();
}
public QueryService(IServiceUoW uoW)
{
_combinedQueryRepository = uoW.GetRepository <CombinedQuery, Guid>();
_subjectRepository = uoW.GetRepository <HumanSubject, string>();
_subjectCharacteristicRepository = uoW.GetRepository <SubjectCharacteristic, int>();
_sampleCharacteristicRepository = uoW.GetRepository <SampleCharacteristic, int>();
_armRepository = uoW.GetRepository <Arm, string>();
_studyRepository = uoW.GetRepository <Study, int>();
_visitRepository = uoW.GetRepository <Visit, int>();
_sdtmRepository = uoW.GetRepository <SdtmRow, Guid>();
_biosampleRepository = uoW.GetRepository <Biosample, int>();
_assayRepository = uoW.GetRepository <Assay, int>();
_observationRepository = uoW.GetRepository <Observation, Guid>();
}
public ActivityService(IServiceUoW uoW, DatasetService datasetService)
{
_activityServiceUnit = uoW;
_activityRepository = uoW.GetRepository <Activity, int>();
_datasetService = datasetService;
}
public AnalysisDatasetService(IServiceUoW uoW)
{
_unitOfWork = uoW;
_analysisDatasetRepository = uoW.GetRepository <AnalysisDataset, Guid>();
_exportFileRepository = uoW.GetRepository <ExportFile, Guid>();
}
public DatasetDescriptorService(IServiceUoW uoW, CacheService cacheService)
{
_dataServiceUnit = uoW;
_datasetRepository = uoW.GetRepository <Dataset, int>();
_variableDefinitionRepository = uoW.GetRepository <VariableDefinition, int>();
}