private void Setup(IAtomContainer atomContainer)
{
// have to setup the connection table before making the group
// otherwise the size may be wrong, but only setup if it doesn't exist
IRefinable refinable = GetRefinable(atomContainer);
int size = GetVertexCount();
PermutationGroup group = new PermutationGroup(new Permutation(size));
base.Setup(group, new EquitablePartitionRefiner(refinable));
}
private IRefinable GetRefinable(IAtomContainer atomContainer)
{
refinable = CreateRefinable(atomContainer);
return(refinable);
}
public EquitablePartitionRefiner(IRefinable refinable)
{
this.refinable = refinable;
}