public virtual List <IPeptide> Create(IProtein protein)
{
List <string> seqList = GeneratePeptideSequences(protein);
List <IPeptide> peptideList = CreateNewPeptides(protein.GetID(), seqList);
Console.WriteLine(peptideList.Count);
protein.SetPeptides(peptideList);
return(peptideList);
}
public List <IPeptide> Create(IProtein protein)
{
List <IPeptide> peptideList = new List <IPeptide>();
List <string> sequences = generator.Generate(protein.GetSequence());
foreach (string seq in sequences)
{
GeneralPeptide peptide = new GeneralPeptide(protein.GetID(), seq);
peptideList.Add(peptide);
}
protein.SetPeptides(peptideList);
return(peptideList);
}
public List <IPeptide> Create(IProtein protein)
{
List <string> pepList = new List <string>();
foreach (string sequence in creator.GeneratePeptideSequences(protein))
{
if (FindPTMPosition.ContainsOGlycanSite(sequence))
{
pepList.Add(sequence);
}
}
List <IPeptide> peptideList = creator.CreateNewPeptides(protein.GetID(), pepList);
protein.SetPeptides(peptideList);
return(peptideList);
}