public IndividualSettingsDTO MapFrom(Individual individual)
{
var originData = individual.OriginData;
var individualDTO = new IndividualSettingsDTO
{
Species = originData.Species,
Population = originData.Population,
SubPopulation = _subPopulationDTOMapper.MapFrom(originData.SubPopulation),
Gender = originData.Gender,
CalculationMethods = originData.AllCalculationMethods().MapAllUsing(_calculationMethodDTOMapper),
DiseaseState = originData.DiseaseState ?? _diseaseStateRepository.HealthyState,
DiseaseStateParameter = originData.DiseaseStateParameters
.Select(_originDataParameterMapper.MapFrom)
.FirstOrDefault() ?? new NullParameterDTO()
};
individualDTO.UpdateValueOriginFrom(originData.ValueOrigin);
individualDTO.SetDefaultParameters(
_parameterMapper.MapAsReadWriteFrom(individual.Organism.Parameter(CoreConstants.Parameters.AGE)),
_parameterMapper.MapAsReadWriteFrom(individual.Organism.Parameter(CoreConstants.Parameters.HEIGHT)),
_parameterMapper.MapAsReadWriteFrom(individual.Organism.Parameter(CoreConstants.Parameters.WEIGHT)),
_parameterMapper.MapAsReadWriteFrom(individual.Organism.Parameter(CoreConstants.Parameters.BMI)),
_parameterMapper.MapAsReadWriteFrom(individual.Organism.Parameter(Constants.Parameters.GESTATIONAL_AGE)));
return(individualDTO);
}
public void RetrieveDefaultValueFor(IndividualSettingsDTO individualSettingsDTO)
{
individualSettingsDTO.SubPopulation = _subPopulationDTOMapper.MapFrom(_originDataTask.DefaultSubPopulationFor(individualSettingsDTO.Species));
//Default parameter such as age etc.. were not defined yet
var originData = _originDataMapper.MapFrom(individualSettingsDTO);
var parameterAge = _parameterMapper.MapAsReadWriteFrom(_individualModelTask.MeanAgeFor(originData));
originData.Age = parameterAge.KernelValue;
var parameterGestationalAge = _parameterMapper.MapAsReadWriteFrom(_individualModelTask.MeanGestationalAgeFor(originData));
originData.GestationalAge = parameterGestationalAge.KernelValue;
setDefaultValues(individualSettingsDTO, originData, parameterAge, parameterGestationalAge);
}
public IndividualSettingsDTO MapFrom(Individual individual)
{
var individualDTO = new IndividualSettingsDTO
{
Species = individual.OriginData.Species,
SpeciesPopulation = individual.OriginData.SpeciesPopulation,
SubPopulation = _subPopulationDTOMapper.MapFrom(individual.OriginData.SubPopulation),
Gender = individual.OriginData.Gender,
CalculationMethods = individual.OriginData.AllCalculationMethods().MapAllUsing(_calculationMethodDTOMapper)
};
individualDTO.SetDefaultParameters(_parameterMapper.MapAsReadWriteFrom(individual.Organism.Parameter(CoreConstants.Parameter.AGE)),
_parameterMapper.MapAsReadWriteFrom(individual.Organism.Parameter(CoreConstants.Parameter.HEIGHT)),
_parameterMapper.MapAsReadWriteFrom(individual.Organism.Parameter(CoreConstants.Parameter.WEIGHT)),
_parameterMapper.MapAsReadWriteFrom(individual.Organism.Parameter(CoreConstants.Parameter.BMI)),
_parameterMapper.MapAsReadWriteFrom(individual.Organism.Parameter(CoreConstants.Parameter.GESTATIONAL_AGE)));
return(individualDTO);
}
public void UpdateDefaultValueFor(IndividualSettingsDTO individualSettingsDTO)
{
individualSettingsDTO.SubPopulation = _subPopulationDTOMapper.MapFrom(_originDataTask.DefaultSubPopulationFor(individualSettingsDTO.Species));
//Default parameter such as age etc.. were not defined yet
var originData = _originDataMapper.MapFrom(individualSettingsDTO);
var parameterAge = _individualModelTask.MeanAgeFor(originData);
if (parameterAge != null)
{
originData.Age = new OriginDataParameter(parameterAge.Value);
}
var parameterGestationalAge = _individualModelTask.MeanGestationalAgeFor(originData);
if (parameterGestationalAge != null)
{
originData.GestationalAge = new OriginDataParameter(parameterGestationalAge.Value);
}
setDefaultValues(individualSettingsDTO, originData, _parameterMapper.MapAsReadWriteFrom(parameterAge), _parameterMapper.MapAsReadWriteFrom(parameterGestationalAge));
}
public IParameterDTO MapFrom(OriginDataParameter originDataParameter)
{
return(_parameterDTOMapper.MapAsReadWriteFrom(parameterFrom(originDataParameter)));
}