public FlatMoleculeToMoleculeBuilderMapper(IParameterContainerTask paramContainerTask, IObjectBaseFactory objectBaseFactory, IFormulaFactory formulaFactory) { _paramContainerTask = paramContainerTask; _objectBaseFactory = objectBaseFactory; _formulaFactory = formulaFactory; }
protected override void Context() { _parameterContainerTask = A.Fake <IParameterContainerTask>(); _containerIdToFormulationMapper = A.Fake <IFlatContainerIdToFormulationMapper>(); sut = new FlatContainerToFormulationMapper(_parameterContainerTask, _containerIdToFormulationMapper); }
public FlatContainerToEventGroupBuilderMapper(IParameterContainerTask parameterContainerTask, IFlatContainerRepository flatContainerRepo, IFlatContainerToEventBuilderMapper eventMapper) { _parameterContainerTask = parameterContainerTask; _flatContainerRepo = flatContainerRepo; _eventMapper = eventMapper; }
public IndividualModelTask(IParameterContainerTask parameterContainerTask, ISpeciesContainerQuery speciesContainerQuery, IBuildingBlockFinalizer buildingBlockFinalizer, IFormulaFactory formulaFactory) { _parameterContainerTask = parameterContainerTask; _speciesContainerQuery = speciesContainerQuery; _buildingBlockFinalizer = buildingBlockFinalizer; _formulaFactory = formulaFactory; }
protected override void Context() { _cloneManager = A.Fake <ICloner>(); _simulationActiveProcessRepository = A.Fake <ISimulationActiveProcessRepository>(); _parameterSetUpdater = A.Fake <IParameterSetUpdater>(); _objectBaseFactory = A.Fake <IObjectBaseFactory>(); _parameterContainerTask = A.Fake <IParameterContainerTask>(); sut = new ProcessToProcessBuilderMapper(_cloneManager, _simulationActiveProcessRepository, _parameterSetUpdater, _objectBaseFactory, _parameterContainerTask); }
public SimulationActiveProcessRepository(IFlatProcessRepository flatProcessesRepository, IParameterContainerTask parameterContainerTask, IFlatProcessToActiveProcessMapper activeProcessMapper) { _flatProcessesRepository = flatProcessesRepository; _parameterContainerTask = parameterContainerTask; _activeProcessMapper = activeProcessMapper; _allSimulationActiveProcesses = new List <IPKSimProcess>(); }
public SchemaItemRepository(IFlatSchemaItemRepository schemaItemRepo, IFlatContainerRepository flatContainerRepo, IParameterContainerTask parameterContainerTask) { _schemaItemRepo = schemaItemRepo; _flatContainerRepo = flatContainerRepo; _parameterContainerTask = parameterContainerTask; _schemaItems = new Cache <string, ISchemaItem>(si => si.ApplicationType.Name); }
public ProcessToProcessBuilderMapper(ICloner cloner, ISimulationActiveProcessRepository simulationActiveProcessRepository, IParameterSetUpdater parameterSetUpdater, IObjectBaseFactory objectBaseFactory, IParameterContainerTask parameterContainerTask) { _cloner = cloner; _simulationActiveProcessRepository = simulationActiveProcessRepository; _parameterSetUpdater = parameterSetUpdater; _objectBaseFactory = objectBaseFactory; _parameterContainerTask = parameterContainerTask; }
public FlatContainerToEventGroupBuilderMapper( IParameterContainerTask parameterContainerTask, IFlatContainerToEventBuilderMapper eventMapper, IObjectBaseFactory objectBaseFactory, IFlatContainerRepository flatContainerRepository, IFlatContainerTagRepository flatContainerTagRepository) : base(objectBaseFactory, flatContainerRepository, flatContainerTagRepository) { _parameterContainerTask = parameterContainerTask; _eventMapper = eventMapper; }
public CompoundProcessRepository(IFlatProcessRepository processRepository, IParameterContainerTask parameterContainerTask, IFlatProcessToCompoundProcessMapper flatProcessToCompoundProcessMapper, IGroupRepository groupRepository) { _processRepository = processRepository; _parameterContainerTask = parameterContainerTask; _flatProcessToCompoundProcessMapper = flatProcessToCompoundProcessMapper; _groupRepository = groupRepository; }
public override void GlobalContext() { _speciesContainerQuery = A.Fake <ISpeciesContainerQuery>(); _parameterContainerTask = A.Fake <IParameterContainerTask>(); _buildingBlockFinalizer = A.Fake <IBuildingBlockFinalizer>(); _formulaFactory = A.Fake <IFormulaFactory>(); _compartment = new Compartment().WithName("compartment"); _organ = new Organ().WithName("organ"); _organ.Name = "organ"; _organism = new Organism().WithName("organism"); sut = new IndividualModelTask(_parameterContainerTask, _speciesContainerQuery, _buildingBlockFinalizer, _formulaFactory); }
public FlatProcessToPassiveTransportMapper(IObjectBaseFactory entityBaseFactory, IFlatProcessDescriptorConditionRepository processDescriptorRepo, IParameterContainerTask parameterContainerTask, IFormulaFactory formulaFactory, IDimensionRepository dimensionRepository) { _entityBaseFactory = entityBaseFactory; _processDescriptorRepo = processDescriptorRepo; _parameterContainerTask = parameterContainerTask; _formulaFactory = formulaFactory; _dimensionRepository = dimensionRepository; }
public CompoundFactory( IObjectBaseFactory objectBaseFactory, IParameterContainerTask parameterContainerTask, IParameterAlternativeFactory parameterAlternativeFactory, IParameterGroupTask parameterGroupTask, ICompoundCalculationMethodCategoryRepository compoundCalculationMethodCategoryRepository) { _objectBaseFactory = objectBaseFactory; _parameterContainerTask = parameterContainerTask; _parameterAlternativeFactory = parameterAlternativeFactory; _parameterGroupTask = parameterGroupTask; _compoundCalculationMethodCategoryRepository = compoundCalculationMethodCategoryRepository; }
public MoleculeBuilderFactory(IParameterFactory parameterFactory, IParameterSetUpdater parameterSetUpdater, IObjectBaseFactory objectBaseFactory, IParameterIdUpdater parameterIdUpdater, IFlatMoleculeRepository flatMoleculeRepository, IParameterContainerTask parameterContainerTask, IFlatMoleculeToMoleculeBuilderMapper moleculeMapper, IDimensionRepository dimensionRepository) { _parameterFactory = parameterFactory; _parameterSetUpdater = parameterSetUpdater; _objectBaseFactory = objectBaseFactory; _parameterIdUpdater = parameterIdUpdater; _flatMoleculeRepository = flatMoleculeRepository; _parameterContainerTask = parameterContainerTask; _moleculeMapper = moleculeMapper; _dimensionRepository = dimensionRepository; }
public StaticReactionRepository(IFlatModelRepository flatModelRepository, IFlatProcessRepository flatProcessesRepository, IFlatModelProcessRepository modelProcessRepository, IParameterContainerTask parameterContainerTask, IFlatProcessToActiveProcessMapper activeProcessMapper) { _flatModelRepository = flatModelRepository; _flatProcessesRepository = flatProcessesRepository; _modelProcessRepository = modelProcessRepository; _parameterContainerTask = parameterContainerTask; _activeProcessMapper = activeProcessMapper; _reactionsByModel = new Cache <string, IList <PKSimReaction> >(); _allReactions = new Cache <string, PKSimReaction>(r => r.Name); }
public ApplicationFactory(IApplicationRepository applicationRepository, IObjectBaseFactory objectBaseFactory, IObjectPathFactory objectPathFactory, IParameterSetUpdater parameterSetUpdater, IDimensionRepository dimensionRepository, IParameterContainerTask parameterContainerTask, IParticleApplicationCreator particleApplicationCreator, ICloneManagerForBuildingBlock cloneManagerForBuildingBlock) { _applicationRepository = applicationRepository; _objectBaseFactory = objectBaseFactory; _objectPathFactory = objectPathFactory; _parameterSetUpdater = parameterSetUpdater; _dimensionRepository = dimensionRepository; _parameterContainerTask = parameterContainerTask; _particleApplicationCreator = particleApplicationCreator; _cloneManagerForBuildingBlock = cloneManagerForBuildingBlock; }
public FlatContainerToApplicationMapper(IParameterContainerTask parameterContainerTask, IApplicationTransportRepository applicationTransportRepository, IEntityPathResolver entityPathResolver, IFlatContainerRepository flatContainerRepository, IFlatContainerIdToContainerMapper flatContainerIdMapper, IObjectBaseFactory objectBaseFactory, IFlatContainerToEventBuilderMapper eventMapper, IFlatContainerTagRepository flatContainerTagRepository) : base(objectBaseFactory, flatContainerRepository, flatContainerTagRepository) { _parameterContainerTask = parameterContainerTask; _applicationTransportRepository = applicationTransportRepository; _entityPathResolver = entityPathResolver; _flatContainerIdMapper = flatContainerIdMapper; _eventMapper = eventMapper; }
public PKSimSpatialStructureFactory(IObjectBaseFactory objectBaseFactory, IParameterContainerTask parameterContainerTask, IModelContainerQuery modelContainerQuery, IModelNeighborhoodQuery modelNeighborhoodQuery, IParameterSetUpdater parameterSetUpdater, IParameterIdUpdater parameterIdUpdater, INeighborhoodFinalizer neighborhoodFinalizer, IEntityPathResolver entityPathResolver) : base(objectBaseFactory) { _objectBaseFactory = objectBaseFactory; _parameterContainerTask = parameterContainerTask; _modelContainerQuery = modelContainerQuery; _modelNeighborhoodQuery = modelNeighborhoodQuery; _parameterSetUpdater = parameterSetUpdater; _parameterIdUpdater = parameterIdUpdater; _neighborhoodFinalizer = neighborhoodFinalizer; _entityPathResolver = entityPathResolver; }
public FlatContainerToFormulationMapper(IParameterContainerTask parameterContainerTask, IFlatContainerIdToFormulationMapper containerIdToFormulationMapper) { _parameterContainerTask = parameterContainerTask; _containerIdToFormulationMapper = containerIdToFormulationMapper; }
public FlatDiseaseStateToDiseaseStateMapper(IParameterContainerTask parameterContainerTask) { _parameterContainerTask = parameterContainerTask; }