private void SaveParameters(MFEInputParameters mfeInputParams)
{
IPSetAlignmentInfo pSetAlignmentInfo = mfeInputParams.AllParameters[MFEPSetKeys.ALIGNMENT_INFO] as IPSetAlignmentInfo;
IPSetChargeStateAssignment chargeStateInfo = mfeInputParams.AllParameters[MFEPSetKeys.CHARGE_STATE_ASSIGNMENT] as IPSetChargeStateAssignment;
IPSetMassHunterProcessing mfeProcessingInfo = mfeInputParams.AllParameters[MFEPSetKeys.MASS_HUNTER_PROCESSING] as IPSetMassHunterProcessing;
PSetCpdGroupFilters filterInfo = mfeInputParams.AllParameters[MFEPSetKeys.MFE_CPD_GROUP_FILTERS] as PSetCpdGroupFilters;
InputParametersUtil.SavePSet(qualAppLogic, pSetAlignmentInfo, QualDAMethod.ParamKeyAlignmentInformation);
InputParametersUtil.SavePSet(qualAppLogic, chargeStateInfo, QualDAMethod.ParamKeyMSChargeStateAssignment);
InputParametersUtil.SavePSet(qualAppLogic, mfeProcessingInfo, QualDAMethod.ParamKeyMFEProcessing);
InputParametersUtil.SavePSet(qualAppLogic, filterInfo, QualDAMethod.ParamKeyCpdGroupFilters);
}
/// <summary>
/// Get the correlation algorithm's alignment parameters (for rMFE and filters)
/// </summary>
/// <returns></returns>
protected CnEngine.UserParameters GetAlignmentParameters()
{
var rv = new CnEngine.UserParameters();
IPSetAlignmentInfo psetAlign = m_AppManager[QualDAMethod.ParamKeyAlignmentInformation] as IPSetAlignmentInfo;
double[] rtTimeCorrelation = new[] { psetAlign.RTMinutes, psetAlign.RTPercent / 100 };
double[] msTolerance = new[] { psetAlign.MassWindowDa / 1000, psetAlign.MassWindowPpm / 1000000 };
rv.TimeToleranceFunctionForCorrelation = new FunctionLinear(rtTimeCorrelation);
rv.MassToleranceFunction = new FunctionLinear(msTolerance);
return(rv);
}
public MFEInputParameters GetParameters()
{
MFEInputParameters mfeInputParams = new MFEInputParameters();
IPSetAlignmentInfo pSetAlignment = InputParametersUtil.GetAlignmentParameters(qualAppLogic);
mfeInputParams.AllParameters.Add(MFEPSetKeys.ALIGNMENT_INFO, pSetAlignment);
IPSetMassHunterProcessing extractionParams = InputParametersUtil.GetMFEProcessingParameters(qualAppLogic);
mfeInputParams.AllParameters.Add(MFEPSetKeys.MASS_HUNTER_PROCESSING, extractionParams);
IPSetChargeStateAssignment chargestateParams = InputParametersUtil.GetChargeStateParameters(qualAppLogic);
mfeInputParams.AllParameters.Add(MFEPSetKeys.CHARGE_STATE_ASSIGNMENT, chargestateParams);
PSetCpdGroupFilters filterInfo = InputParametersUtil.GetFilterParameters(qualAppLogic);
mfeInputParams.AllParameters.Add(MFEPSetKeys.MFE_CPD_GROUP_FILTERS, filterInfo);
return(mfeInputParams);
}
public static IPSetAlignmentInfo GetAlignmentParameters(ProfinderLogic AppLogic)
{
IPSetAlignmentInfo alignmentInfo = AppLogic[QualDAMethod.ParamKeyAlignmentInformation] as IPSetAlignmentInfo;
return(alignmentInfo);
}
