private void finalizeIndividual(Individual individual)
{
var firstNeighborhood = individual?.Neighborhoods.GetChildren <INeighborhood>().FirstOrDefault();
if (firstNeighborhood == null || firstNeighborhood.FirstNeighbor != null)
{
return;
}
_neighborhoodFinalizer.SetNeighborsIn(individual);
}
private void addNeighborhoods(ISpatialStructure spatialStructure, Organism organism, Individual individual, ModelProperties modelProperties, IFormulaCache formulaCache)
{
var neighborhoodList = _modelNeighborhoodQuery.NeighborhoodsFor(individual.Neighborhoods, modelProperties).ToList();
foreach (var neighborhood in neighborhoodList)
{
addNeighborhood(neighborhood, spatialStructure, individual.OriginData, modelProperties, formulaCache);
}
_neighborhoodFinalizer.SetNeighborsIn(organism, neighborhoodList);
}
private void finalizeIndividual(Individual individual)
{
if (individual == null)
{
return;
}
_neighborhoodFinalizer.SetNeighborsIn(individual);
_individualPathWithRootExpander.AddRootToPathIn(individual);
_keywordReplacerTask.ReplaceIn(individual);
_referencesResolver.ResolveReferencesIn(individual);
}
private void convertIndividual(Individual individual)
{
//possible for imported simulation where individual is not defined
if (individual == null)
{
return;
}
_renalAgingCalculationMethodUpdater.AddRenalAgingCalculationMethodTo(individual);
_individualUpdater.AddScalingExponentForFluidFlowTo(individual);
updateLiverStructure(individual);
updateIsLiverZonatedValue(individual);
updateLiverExpressions(individual);
updateOntogenyFactorVisibility(individual);
removeVolumePlasmaParameter(individual.Organism);
_neighborhoodFinalizer.SetNeighborsIn(individual);
}