private static IBuildQueueJob CreateNewBuildJob(
ComponentConfiguration componentConfiguration,
CancellationTokenSource <CompileCancellationToken> cancellationTokenSource,
ProgressToken progressToken,
IJobCollection jobCollection)
{
IBuildableComponentSubtype buildableComponentSubtype = (IBuildableComponentSubtype)componentConfiguration.ComponentSubtype;
string outputFilePath = buildableComponentSubtype.GetOutputTopLevelFilePath(componentConfiguration);
if (jobCollection.JobInProgress(outputFilePath))
{
throw new CommandLineOperationException($"Build at {outputFilePath} is already in progress.");
}
BuildId currentBuildId = buildableComponentSubtype.CreateBuildId(componentConfiguration);
BuildQueueJobId buildQueueJobId = BuildQueueJobExtension.CreateBuildQueueJobId(currentBuildId);
IBuildQueueJob job = jobCollection.CreateNewJob(
buildQueueJobId,
componentConfiguration.ComponentDefinition.ReferencingEnvoy,
buildableComponentSubtype.XmlName,
outputFilePath,
cancellationTokenSource,
progressToken);
return(job);
}
public Model Initial()
{
_currentCavity = 95;
_currentPlate = null;
_currentTube = 15;
_currentTubeRunner = null;
_platesCreated = 0;
_tubeRunnersCreated = 0;
_result = new JobCollection.JobCollection();
_locationRepository = new LocationRepository();
foreach (var sample in _jobRequest.Samples)
{
AddSample(sample);
}
foreach (var reagent in _jobRequest.Assay.Reagents)
{
AddReagent(reagent);
}
AddSteps(_jobRequest.Samples);
_resultModel = new Model
{
RootElements = { _result },
ModelUri = new Uri("temp:result")
};
return(_resultModel);
}
public static void CalculateActualChanges(IJobCollection jobCollection, string[] changes, out Dictionary <IJob, JobStatus> stateChanges, out Dictionary <ITipLiquidTransfer, JobStatus> tipChanges, out List <string> newSamples)
{
stateChanges = new Dictionary <IJob, JobStatus>();
tipChanges = new Dictionary <ITipLiquidTransfer, JobStatus>();
newSamples = new List <string>();
foreach (var line in changes)
{
if (line.StartsWith("NewSample"))
{
newSamples.Add(line.Substring("NewSample".Length + 1));
continue;
}
var firstUnderscore = line.IndexOf('_');
var lastUnderscore = line.LastIndexOf('_');
var stepName = line.Substring(0, firstUnderscore);
var plateName = line.Substring(firstUnderscore + 1, lastUnderscore - firstUnderscore - 1);
var state = line.Substring(lastUnderscore + 1);
foreach (var job in jobCollection.Jobs.Where(j => j.ProtocolStepName == stepName))
{
switch (job)
{
case LiquidTransferJob liquidTransfer:
if (liquidTransfer.Target.Name == plateName)
{
var wasSuccess = true;
foreach (var tip in liquidTransfer.Tips)
{
var tipSuccess = state[tip.TargetCavityIndex] == 'S';
wasSuccess &= tipSuccess;
tipChanges.Add(tip, tipSuccess ? JobStatus.Succeeded : JobStatus.Failed);
}
stateChanges.Add(liquidTransfer, wasSuccess ? JobStatus.Succeeded : JobStatus.Failed);
}
break;
case IncubateJob incubate:
if (incubate.Microplate.Name == plateName)
{
stateChanges.Add(incubate, state == "S" ? JobStatus.Succeeded : JobStatus.Failed);
}
break;
case WashJob washJob:
if (washJob.Microplate.Name == plateName)
{
stateChanges.Add(washJob, state == "S" ? JobStatus.Succeeded : JobStatus.Failed);
}
break;
}
}
}
}
/// <summary>
/// Constructs an instance of a <see cref="CommandLineBuildJobMonitor"/>. Creates a build job for a component build and
/// begins monitoring the job collection for child jobs to be added.
/// </summary>
/// <param name="componentConfiguration">The <see cref="ComponentConfiguration"/> for the component build being monitored.</param>
/// <param name="progressToken">Progress token to create the build job with.</param>
/// <param name="cancellationTokenSource">Cancellation token source to create the build job with.</param>
public CommandLineBuildJobMonitor(
ComponentConfiguration componentConfiguration,
ProgressToken progressToken,
CancellationTokenSource <CompileCancellationToken> cancellationTokenSource)
{
_jobFinishedCompletionSource = new TaskCompletionSource <object>();
_jobCollection = componentConfiguration.Host.GetSharedExportedValue <IJobCollection>();
_jobCollection.CollectionChanged += JobCollectionOnCollectionChanged;
_rootJob = CreateNewBuildJob(componentConfiguration, cancellationTokenSource, progressToken, _jobCollection);
if (_rootJob == null)
{
throw new CommandLineOperationException(LocalizedStrings.BuildComponentTool_FailToStartBuildErrorMessage);
}
SubscribeToRootJobFinishedEvent();
}
public CollectionOfJobCollections(IJobCollection jobCollection, ITransformationContext context)
: base(jobCollection.Jobs.GroupBy(j => j.ProtocolStepName).Select(group => new JobsOfProtocolStep(group.Key, group, context)))
{
_jobCollection = jobCollection;
}
