/// <summary>
/// Dispose field instances.
/// </summary>
/// <param name="disposeManaged">If disposeManaged equals true, clean all resources.</param>
protected virtual void Dispose(bool disposeManaged)
{
if (disposeManaged)
{
if (this.scaffoldBuilder != null)
{
this.scaffoldBuilder.Dispose();
}
this.graph = null;
this.sequenceReads = null;
this.danglingLinksPurger = null;
this.redundantPathsPurger = null;
this.contigBuilder = null;
this.scaffoldBuilder = null;
}
}
/// <summary>
/// Initializes the above defined fields. For each step in assembly
/// we use a seperate class for implementation. This method assigns
/// these variables to classes with desired implementation.
/// </summary>
private void InitializeDefaultGraphModifiers()
{
// Assign uninitialized fields to default values
if (_danglingLinksPurger == null)
{
_danglingLinksPurger = new DanglingLinksPurger();
}
if (_redundantPathsPurger == null)
{
_redundantPathsPurger = new RedundantPathsPurger(_redundantPathLengthThreshold);
}
if (_lowCoverageContigPurger == null)
{
_lowCoverageContigPurger = new SimplePathContigBuilder();
}
}
/// <summary>
/// Dispose field instances
/// </summary>
/// <param name="disposeManaged">If disposeManaged equals true, clean all resources</param>
protected virtual void Dispose(bool disposeManaged)
{
if (disposeManaged)
{
if (_graph != null)
{
_graph.Dispose();
}
if (_scaffoldBuilder != null)
{
_scaffoldBuilder.Dispose();
}
_graph = null;
_sequenceReads = null;
_danglingLinksPurger = null;
_redundantPathsPurger = null;
_contigBuilder = null;
_scaffoldBuilder = null;
}
}
