public int IndexOf(IGEPOrganism item)
{
return base.IndexOf(item: item);
}
public void Insert(int index, IGEPOrganism item)
{
base.Insert(index: index, item: item);
}
public void CopyTo(IGEPOrganism[] array, int arrayIndex)
{
base.CopyTo(array: array, arrayIndex: arrayIndex);
}
public bool Remove(IGEPOrganism item)
{
return base.Remove(item: item);
}
public void Add(IGEPOrganism item)
{
base.Add(organism: item);
}
public bool Contains(IGEPOrganism item)
{
return base.Contains(item: item);
}
public GEPPhenome(IGEPOrganism organism, IGEPSurroundings surroundings)
: base(organism: organism, surroundings: surroundings)
{
}
public GEPGenome(IGEPOrganism organism)
: base(organism)
{
}
protected GEPPhenomeBase(IGEPOrganism organism, IGEPSurroundings surroundings)
: base(organism: organism, surroundings: surroundings)
{
}
protected GEPGenomeBase(IGEPOrganism organism)
: base(organism)
{
}
private double GetValue(IGEPOrganism organism, params IRegistry[] inputs)
{
return inputs.Sum(input => RateOrganism(organism, input)) / inputs.Length;
}
private double RateOrganism(IGEPOrganism o, IRegistry inputRegistry)
{
var behavior = o.Behave(new GEPSurroundings(inputRegistry));
const double worstFitness = 15000;
if (behavior.Success)
{
var resultsRegistry = o.ResultsRegistry;
resultsRegistry.MoveToZero();
var resultValue = resultsRegistry.Read().Value;
if (double.IsNaN(resultValue) || double.IsInfinity(resultValue))
return worstFitness;
var desiredOutput = this.Function(inputRegistry.ReadAt(0).Value);
var fitness = Math.Abs(resultValue - desiredOutput);
if(double.IsNaN(fitness) || double.IsInfinity(fitness))
return worstFitness;
return fitness;
}
else
return worstFitness;
}
private IRegistry GetInputRegistry(IGEPOrganism o, double valueAtZeroPosition)
{
var inputRegistry = new Registry(o.Parent.InputRegistryIdentifier, RegistryType.Input, readOnly: false);
inputRegistry.Write(new AminoAcidResult(valueAtZeroPosition));
inputRegistry.ReadOnly = true;
return inputRegistry;
}
