public static async Task <TResource> ReadOneFromBundleWithContinuationAsync <TResource>(
this Bundle bundle,
IFhirService fhirService,
bool throwOnMultipleFound = true)
where TResource : Resource, new()
{
if (bundle == null)
{
return(null);
}
var resources = await bundle?.ReadFromBundleWithContinuationAsync <TResource>(fhirService, 2);
var resourceCount = resources.Count();
if (resourceCount == 0)
{
return(null);
}
if (throwOnMultipleFound && resourceCount > 1)
{
throw new MultipleResourceFoundException <TResource>(resourceCount);
}
return(resources.FirstOrDefault());
}
public MaintenanceService(IFhirService _fhirServiceFull, ILocalhost localhost, IGenerator keyGenerator, IFhirStoreAdministration fhirStoreAdministration, IFhirIndex fhirIndex)
{
this._fhirServiceFull = _fhirServiceFull;
this.localhost = localhost;
this.keyGenerator = keyGenerator;
this.fhirStoreAdministration = fhirStoreAdministration;
this.fhirIndex = fhirIndex;
}
public ScopedFhirServiceBuilder(Uri baseUri, IStorageBuilder <TScope> storageBuilder,
IServiceListener[] listeners = null)
{
this.baseUri = baseUri;
this.storageBuilder = storageBuilder;
this.listeners = listeners;
this.fhirService = FhirServiceFactory.GetFhirService(baseUri, storageBuilder, listeners);
}
public MaintenanceHub(IFhirService fhirService, ILocalhost localhost, IFhirStoreAdministration fhirStoreAdministration, IFhirIndex fhirIndex, ExamplesSettings examplesSettings)
{
_localhost = localhost;
_fhirService = fhirService;
_fhirStoreAdministration = fhirStoreAdministration;
_fhirIndex = fhirIndex;
_examplesSettings = examplesSettings;
}
public InitializerHub(IFhirService fhirService, ILocalhost localhost, IFhirStoreAdministration fhirStoreAdministration, IFhirIndex fhirIndex)
{
this.localhost = localhost;
this.fhirService = fhirService;
this.fhirStoreAdministration = fhirStoreAdministration;
this.fhirIndex = fhirIndex;
this.resources = null;
}
public HttpResponseMessage ResourceDelete(string type, Key key, IFhirService service)
{
if (service != null)
{
return(service.Delete(key));
}
throw new ArgumentException("Service is null, cannot update resource of type " + type);
}
public ObservationController(IFhirService fhirService, IObservationService observationService,
IConverter <Observation, ObservationDto> observationToDtoConverter,
IConverter <IList <Observation>, IList <ObservationDto> > observationsToDtoConverter)
{
_observationService = observationService;
_observationToDtoConverter = observationToDtoConverter;
_observationsToDtoConverter = observationsToDtoConverter;
fhirService.Initialize();
}
public EndpointPipelineStep(
IOptions <DicomWebConfiguration> dicomWebConfiguration,
IFhirService fhirService)
{
EnsureArg.IsNotNull(dicomWebConfiguration?.Value, nameof(dicomWebConfiguration));
EnsureArg.IsNotNull(fhirService, nameof(fhirService));
_fhirService = fhirService;
_dicomWebEndpoint = dicomWebConfiguration.Value.Endpoint.ToString();
}
public ImagingStudyUpsertHandler(
IFhirService fhirService,
IImagingStudySynchronizer imagingStudySynchronizer)
{
EnsureArg.IsNotNull(fhirService, nameof(fhirService));
EnsureArg.IsNotNull(imagingStudySynchronizer, nameof(_imagingStudySynchronizer));
_fhirService = fhirService;
_imagingStudySynchronizer = imagingStudySynchronizer;
}
public ImagingStudyDeleteHandler(
IFhirService fhirService,
IOptions <DicomWebConfiguration> dicomWebConfiguration)
{
EnsureArg.IsNotNull(fhirService, nameof(fhirService));
EnsureArg.IsNotNull(dicomWebConfiguration?.Value, nameof(dicomWebConfiguration));
_fhirService = fhirService;
_dicomWebEndpoint = dicomWebConfiguration.Value.Endpoint.ToString();
}
public PatientPipelineStep(
IFhirService fhirService,
IPatientSynchronizer patientSynchronizer)
{
EnsureArg.IsNotNull(fhirService, nameof(fhirService));
EnsureArg.IsNotNull(patientSynchronizer, nameof(patientSynchronizer));
_fhirService = fhirService;
_patientSynchronizer = patientSynchronizer;
}
public PatientService(IFhirService fhirService,
ICitizenshipService citizenshipService,
IConverter <PatientCsv, Patient> patientCsvToPatientConverter,
IConverter <PatientDto, Patient> patientDtoToPatientConverter)
{
_citizenshipService = citizenshipService;
_patientCsvToPatientConverter = patientCsvToPatientConverter;
_patientDtoToPatientConverter = patientDtoToPatientConverter;
fhirService.Initialize();
_fhirClient = fhirService.Client;
}
public ImagingStudyDeleteHandlerTests()
{
_configuration = new DicomWebConfiguration()
{
Endpoint = new System.Uri(DefaultDicomWebEndpoint),
};
IOptions <DicomWebConfiguration> optionsConfiguration = Options.Create(_configuration);
_fhirService = Substitute.For <IFhirService>();
_imagingStudyDeleteHandler = new ImagingStudyDeleteHandler(_fhirService, optionsConfiguration);
}
public PatientController(IFhirService fhirService, IPatientService patientService,
IConverter <Patient, PatientDetailDto> patientToDtoConverter,
IConverter <IList <Patient>, IList <PatientDetailDto> > patientsToDtoConverter,
IValidator <IList <PatientCsv> > patientsCsvValidator)
{
_patientService = patientService;
_patientToDtoConverter = patientToDtoConverter;
_patientsToDtoConverter = patientsToDtoConverter;
_patientsCsvValidator = patientsCsvValidator;
fhirService.Initialize();
}
public ImagingStudyUpsertHandlerTests()
{
_configuration = new DicomWebConfiguration()
{
Endpoint = new System.Uri(DefaultDicomWebEndpoint),
};
IOptions <DicomWebConfiguration> optionsConfiguration = Options.Create(_configuration);
_fhirService = Substitute.For <IFhirService>();
_imagingStudySynchronizer = new ImagingStudySynchronizer(new ImagingStudyPropertySynchronizer(), new ImagingStudySeriesPropertySynchronizer(), new ImagingStudyInstancePropertySynchronizer());
_imagingStudyUpsertHandler = new ImagingStudyUpsertHandler(_fhirService, _imagingStudySynchronizer, optionsConfiguration);
}
public ImagingStudyUpsertHandler(
IFhirService fhirService,
IImagingStudySynchronizer imagingStudySynchronizer,
IOptions <DicomWebConfiguration> dicomWebConfiguration)
{
EnsureArg.IsNotNull(fhirService, nameof(fhirService));
EnsureArg.IsNotNull(imagingStudySynchronizer, nameof(_imagingStudySynchronizer));
EnsureArg.IsNotNull(dicomWebConfiguration?.Value, nameof(dicomWebConfiguration));
_fhirService = fhirService;
_imagingStudySynchronizer = imagingStudySynchronizer;
_dicomWebEndpoint = dicomWebConfiguration.Value.Endpoint.ToString();
}
public EndpointPipelineStepTests()
{
_configuration = new DicomWebConfiguration()
{
Endpoint = new System.Uri(DefaultDicomWebEndpoint),
};
IOptions <DicomWebConfiguration> optionsConfiguration = Options.Create(_configuration);
_fhirService = Substitute.For <IFhirService>();
_endpointPipeline = new EndpointPipelineStep(optionsConfiguration, _fhirService);
}
public R4FhirImportService(
IResourceIdentityService resourceIdentityService,
IFhirService fhirService,
IFhirTemplateProcessor <ILookupTemplate <IFhirTemplate>, Model.Observation> fhirTemplateProcessor,
IMemoryCache observationCache,
ITelemetryLogger logger)
{
_fhirTemplateProcessor = EnsureArg.IsNotNull(fhirTemplateProcessor, nameof(fhirTemplateProcessor));
_fhirService = EnsureArg.IsNotNull(fhirService, nameof(fhirService));
_observationCache = EnsureArg.IsNotNull(observationCache, nameof(observationCache));
_logger = EnsureArg.IsNotNull(logger, nameof(logger));
ResourceIdentityService = EnsureArg.IsNotNull(resourceIdentityService, nameof(resourceIdentityService));
}
public HttpResponseMessage ResourceCreate(string type, Resource resource, IFhirService service)
{
if (service != null && !string.IsNullOrEmpty(type) && resource != null)
{
var key = Key.Create(type);
var result = service.Create(key, resource);
if (result != null)
{
return(result);
}
}
return(new HttpResponseMessage(HttpStatusCode.Ambiguous));
}
public DicomCastWorkerTests()
{
_cancellationToken = _cancellationTokenSource.Token;
_dicomCastWorkerConfiguration.PollInterval = TimeSpan.Zero;
_fhirService = Substitute.For <IFhirService>();
_dicomCastWorker = new DicomCastWorker(
Options.Create(_dicomCastWorkerConfiguration),
_changeFeedProcessor,
NullLogger <DicomCastWorker> .Instance,
_hostApplication,
_fhirService);
}
public DicomCastWorker(
IOptions <DicomCastWorkerConfiguration> dicomCastWorkerConfiguration,
IChangeFeedProcessor changeFeedProcessor,
ILogger <DicomCastWorker> logger,
IHostApplicationLifetime hostApplicationLifetime,
IFhirService fhirService)
{
EnsureArg.IsNotNull(dicomCastWorkerConfiguration?.Value, nameof(dicomCastWorkerConfiguration));
EnsureArg.IsNotNull(changeFeedProcessor, nameof(changeFeedProcessor));
EnsureArg.IsNotNull(logger, nameof(logger));
EnsureArg.IsNotNull(hostApplicationLifetime, nameof(hostApplicationLifetime));
EnsureArg.IsNotNull(fhirService, nameof(fhirService));
_dicomCastWorkerConfiguration = dicomCastWorkerConfiguration.Value;
_changeFeedProcessor = changeFeedProcessor;
_logger = logger;
_hostApplicationLifetime = hostApplicationLifetime;
_fhirService = fhirService;
}
public MaintenanceHub(
IFhirService fhirService,
ILocalhost localhost,
IFhirStoreAdministration fhirStoreAdministration,
IFhirIndex fhirIndex,
ExamplesSettings examplesSettings,
IIndexRebuildService indexRebuildService,
ILogger <MaintenanceHub> logger,
IHubContext <MaintenanceHub> hubContext)
{
_localhost = localhost;
_fhirService = fhirService;
_fhirStoreAdministration = fhirStoreAdministration;
_fhirIndex = fhirIndex;
_examplesSettings = examplesSettings;
_indexRebuildService = indexRebuildService;
_logger = logger;
_hubContext = hubContext;
}
private static async Task <IEnumerable <TResource> > ReadFromBundleWithContinuationAsync <TResource>(
this Bundle bundle,
IFhirService fhirService,
int?count = null)
where TResource : Resource
{
EnsureArg.IsNotNull(fhirService, nameof(fhirService));
var resources = new List <TResource>();
Action <Bundle> storeResources = (bundle) =>
{
foreach (var r in bundle.ReadFromBundle <TResource>(count))
{
if (count == 0)
{
break;
}
resources.Add(r);
if (count != null)
{
count--;
}
}
};
storeResources.Invoke(bundle);
await foreach (var currentBundle in fhirService.IterateOverAdditionalBundlesAsync(bundle))
{
storeResources.Invoke(currentBundle);
}
return(resources);
}
public R4DeviceAndPatientWithEncounterLookupIdentityService(IFhirService fhirService)
: base(fhirService)
{
}
public FhirController(IFhirService fhirService, SparkSettings settings)
{
_fhirService = fhirService ?? throw new ArgumentNullException(nameof(fhirService));
_settings = settings ?? throw new ArgumentNullException(nameof(settings));
}
public OrganizationService(IFhirService fhirService)
{
fhirService.Initialize();
_fhirClient = fhirService.Client;
}
public OrganizationController(IFhirService fhirService, IOrganizationService organizationService)
{
_organizationService = organizationService;
fhirService.Initialize();
}
public FhirController()
{
service = DependencyCoupler.Inject <IFhirService>();
}
public FhirController(IFhirService fhirService)
{
// This will be a (injected) constructor parameter in ASP.vNext.
_fhirService = fhirService;
}
public R4DeviceAndPatientWithEncounterLookupIdentityService(IFhirService fhirService, ResourceManagementService resourceIdService)
: base(fhirService, resourceIdService)
{
}
public FhirController()
{
service = DependencyCoupler.Inject<IFhirService>();
}