public void BuildListTest()
{
int scanNumber = 0; // TODO: Initialize to an appropriate value
IExperimentParser experimentParser = null; // TODO: Initialize to an appropriate value
ActualListBuilder target = new ActualListBuilder(scanNumber, experimentParser); // TODO: Initialize to an appropriate value
target.BuildList();
Assert.Inconclusive("A method that does not return a value cannot be verified.");
}
/// <summary>
/// This constructor takes in a scan number of the desired experiment data with a provided parser that is not null.
/// </summary>
/// <param name="scanNumber">A scan number referenecing data in an experiment file.</param>
/// <param name="experimentParser">An interface for reading experiment files (i.e. ".mzXML"...).</param>
public ActualListBuilder(int scanNumber, IExperimentParser experimentParser)
{
if (experimentParser != null)
{
m_scanNumber = scanNumber;
m_fileParser = experimentParser;
ElementList = new List <Element>();
}
else
{
//Throw Exception?
}
}
public List <Element> BuildActualList(int scanNumber, string fileLocation) //Idea is to check the extension, call the right parser based on extension of file name.
{
string mzXML = ".mzxml";
string raw = ".raw";
string extension = Path.GetExtension(fileLocation);
extension = extension.ToLower();
if (m_parser == null)
{
if (extension.Equals(mzXML))
{
m_parser = new MzParser(fileLocation);
m_actualBuilder = new ActualListBuilder(scanNumber, m_parser);
}
if (extension.Equals(raw))
{
m_parser = new ThermoRawParser(fileLocation);
m_actualBuilder = new ActualListBuilder(scanNumber, m_parser);
}
}
else
{
if (m_parser.Filename != fileLocation)
{
if (extension.Equals(mzXML))
{
m_parser = new MzParser(fileLocation);
m_actualBuilder = new ActualListBuilder(scanNumber, m_parser);
}
if (extension.Equals(raw))
{
m_parser = new ThermoRawParser(fileLocation);
m_actualBuilder = new ActualListBuilder(scanNumber, m_parser);
}
}
m_actualBuilder.SetScanNumber(scanNumber);
}
m_actualBuilder.BuildList();
return(m_actualBuilder.ElementList);
}
