internal static int GetCodonRange(int position, ICodingBlock codingBlock)
{
int currentPhase = (position - codingBlock.Start + codingBlock.StartPhase) % 3;
int range = position + 2 - currentPhase;
return(Math.Min(range, codingBlock.End)); //don't cross the block boundary for now
}
private static int GetFunctionBlockRange(IInterval interval, ICodingBlock overlappingCodingBlock)
{
// only check codon boundary in the same exon for now
return(GetCodonRange(interval.Start, overlappingCodingBlock));
}
