public void GetMSLevelTest1()
{
Run run = new ICR2LSRun(icr2LSRawDatafile1);
int scanLevel = run.GetMSLevel(2210);
Console.WriteLine(scanLevel);
}
public void test1()
{
Run run = new ICR2LSRun(icr2LSRawDatafile1);
run.CurrentScanSet = new ScanSet(2210);
Task msGen = new GenericMSGenerator(732, 746);
msGen.Execute(run.ResultCollection);
Task peakdetector = new DeconToolsPeakDetector();
((DeconToolsPeakDetector)peakdetector).PeakBackgroundRatio = 5;
((DeconToolsPeakDetector)peakdetector).SigNoiseThreshold = 2;
peakdetector.Execute(run.ResultCollection);
Console.WriteLine("Peaks detected = " + run.PeakList.Count);
TomN14N15Analyzer analyzer = new TomN14N15Analyzer();
analyzer.ExtractN14N15Values(run.ResultCollection);
Console.WriteLine("Peaks detected = " + run.PeakList.Count);
Assert.AreEqual(14, run.PeakList.Count);
}
public void GetSpectrumTest1()
{
Run run = new ICR2LSRun(icr2LSRawDatafile1);
run.GetMassSpectrum(new ScanSet(2210), 0, 2000);
Assert.AreEqual(211062, run.XYData.Xvalues.Length);
}
public void GetSpectrumSpeedTest2()
{
Run run = new ICR2LSRun(icr2LSRawDatafile1);
int numScansToGet = 10;
Stopwatch sw = new Stopwatch();
sw.Start();
for (int i = 0; i < numScansToGet; i++)
{
run.GetMassSpectrum(new ScanSet(2210), 500, 600); //
}
sw.Stop();
double avgTime = ((double)sw.ElapsedMilliseconds) / (double)numScansToGet;
Console.WriteLine("Average GetScans() time in milliseconds for " + numScansToGet + " scans = \t" + avgTime); //141 ms
}
public void GetTICTest1()
{
int scanNum = 2210;
Run run = new ICR2LSRun(icr2LSRawDatafile1);
run.GetMassSpectrum(new ScanSet(scanNum), 800, 2000);
float ticVal = run.GetTIC(400, 2000);
System.Diagnostics.Stopwatch sw = new System.Diagnostics.Stopwatch();
sw.Start();
ticVal = run.GetTIC(400, 2000);
sw.Stop();
Console.WriteLine(sw.ElapsedMilliseconds);
Assert.AreEqual(3070655000m, (decimal)ticVal); //TODO: need to confirm this number
}
public void GetSpectrumTest2()
{
Run run = new ICR2LSRun(icr2LSRawDatafile1);
Stopwatch sw = new Stopwatch();
sw.Start();
run.GetMassSpectrum(new ScanSet(2210), 500, 550);
sw.Stop();
Console.WriteLine(sw.ElapsedMilliseconds);
StringBuilder sb = new StringBuilder();
TestUtilities.GetXYValuesToStringBuilder(sb, run.XYData.Xvalues, run.XYData.Yvalues);
Console.Write(sb.ToString());
Assert.AreEqual(18580, run.XYData.Xvalues.Length);
}
public void GetNumScansTest1()
{
Run run = new ICR2LSRun(icr2LSRawDatafile1);
Console.WriteLine(run.GetNumMSScans());
}