public AutoQCBackgroundWorker(IAppControl appControl, IProcessControl processControl, IAutoQCLogger logger) { _appControl = appControl; _processControl = processControl; _logger = logger; _fileWatcher = new AutoQCFileSystemWatcher(logger); }
public AutoQCFileSystemWatcher(IAutoQCLogger logger) { _fileWatcher = InitFileSystemWatcher(); _logger = logger; _networkDrive = new NetworkDriveUtil(this, logger); }
public bool ReadLastAcquiredFileDate(IAutoQCLogger logger, IProcessControl processControl) { logger.Log("Getting the acquisition date on the newest file imported into the Skyline document.", 1, 0); var exeDir = Path.GetDirectoryName(Assembly.GetExecutingAssembly().Location); if (exeDir == null) { logger.LogError("Cound not get path to the Skyline report file"); return(false); } var skyrFile = Path.Combine(exeDir, "FileAcquisitionTime.skyr"); var reportFile = Path.Combine(SkylineFileDir, "AcquisitionTimes.csv"); // Export a report from the given Skyline file var args = string.Format( @" --in=""{0}"" --report-conflict-resolution=overwrite --report-add=""{1}"" --report-name=""{2}"" --report-file=""{3}""", SkylineFilePath, skyrFile, "AcquisitionTimes", reportFile); var procInfo = new ProcessInfo(AutoQCForm.SkylineRunnerPath, AutoQCForm.SKYLINE_RUNNER, args, args); if (!processControl.RunProcess(procInfo)) { logger.LogError("Error getting the last acquired file date from the Skyline document."); return(false); } // Read the exported report to get the last AcquiredTime for imported results in the Skyline doucment. if (!File.Exists(reportFile)) { logger.LogError("Could not find report outout {0}", reportFile); return(false); } try { LastAcquiredFileDate = GetLastAcquiredFileDate(reportFile, logger); if (!LastAcquiredFileDate.Equals(DateTime.MinValue)) { logger.Log("The most recent acquisition date in the Skyline document is {0}", LastAcquiredFileDate); } else { logger.Log("The Skyline document does not have any imported results."); } } catch (IOException e) { logger.LogError("Exception reading file {0}. Exception details are: ", reportFile); logger.LogException(e); return(false); } return(true); }
public bool IsIntegrateAllChecked(IAutoQCLogger logger) { try { using (var stream = new FileStream(SkylineFilePath, FileMode.Open)) { using (XmlReader reader = XmlReader.Create(stream)) { reader.MoveToContent(); var done = false; while (reader.Read() && !done) { switch (reader.NodeType) { case XmlNodeType.Element: if (reader.Name == "transition_integration") { if (reader.MoveToAttribute("integrate_all")) { bool integrateAll; Boolean.TryParse(reader.Value, out integrateAll); return(integrateAll); } done = true; } break; case XmlNodeType.EndElement: if (reader.Name.Equals("transition_settings")) // We have come too far { done = true; } break; } } } } } catch (Exception e) { logger.LogError("Exception reading file {0}. Exception details are: ", SkylineFilePath); logger.LogException(e); return(false); } logger.LogError("Skyline documents with QC results should have the\"Integrate all\" setting, under the \"Settings\" menu, checked. Please save the Skyline document with \"Integrate all\" checked and restart AutoQC."); return(false); }
private static DateTime GetLastAcquiredFileDate(string reportFile, IAutoQCLogger logger) { var lastAcq = new DateTime(); using (var reader = new StreamReader(reportFile)) { string line; // Read the column headers var first = true; while ((line = reader.ReadLine()) != null) { if (first) { first = false; continue; } var values = line.Split(','); if (values.Length == 3) { DateTime acqDate = new DateTime(); try { acqDate = DateTime.Parse(values[2]); } catch (Exception e) { logger.LogError("Error parsing acquired time from Skyline report: {0}", reportFile); logger.LogException(e); } if (acqDate.CompareTo(lastAcq) == 1) { lastAcq = acqDate; } } } } return(lastAcq); }
public ProcessRunner(IAutoQCLogger logger) { _logger = logger; }
public SprocopSettingsTab(IAppControl appControl, IAutoQCLogger logger) : base(appControl, logger) { }
public PanoramaSettingsTab(IAppControl appControl, IAutoQCLogger logger) : base(appControl, logger) { Settings = new PanoramaSettings(); }
public PanoramaPinger(PanoramaSettingsTab panoramaSettingsTab, IAutoQCLogger logger) { _panoramaSettingsTab = panoramaSettingsTab; _logger = logger; }
public AutoQCFileSystemWatcher(IAutoQCLogger logger) { _fileWatcher = InitFileSystemWatcher(); _logger = logger; }
protected SettingsTab(IAppControl appControl, IAutoQCLogger logger) { _appControl = appControl; Logger = logger; }
public TestProcessControl(IAutoQCLogger logger) { _logger = logger; }
public MockProcessRunner(IAutoQCLogger logger) : base(logger) { }
public MainSettingsTab(IAppControl appControl, IAutoQCLogger logger) : base(appControl, logger) { Settings = new MainSettings(); }
public NetworkDriveUtil(AutoQCFileSystemWatcher fileSystemWatcher, IAutoQCLogger logger) { _fileSystemWatcher = fileSystemWatcher; _logger = logger; }
public bool IsIntegrateAllChecked(IAutoQCLogger logger) { try { using (var stream = new FileStream(SkylineFilePath, FileMode.Open)) { using (XmlReader reader = XmlReader.Create(stream)) { reader.MoveToContent(); var done = false; while (reader.Read() && !done) { switch (reader.NodeType) { case XmlNodeType.Element: if (reader.Name == "transition_integration") { if (reader.MoveToAttribute("integrate_all")) { bool integrateAll; Boolean.TryParse(reader.Value, out integrateAll); return integrateAll; } done = true; } break; case XmlNodeType.EndElement: if (reader.Name.Equals("transition_settings")) // We have come too far { done = true; } break; } } } } } catch (Exception e) { logger.LogError("Exception reading file {0}. Exception details are: ", SkylineFilePath); logger.LogException(e); return false; } logger.LogError("Skyline documents with QC results should have the\"Integrate all\" setting, under the \"Settings\" menu, checked. Please save the Skyline document with \"Integrate all\" checked and restart AutoQC."); return false; }
public bool ReadLastAcquiredFileDate(IAutoQCLogger logger, IProcessControl processControl) { logger.Log("Getting the acquisition date on the newest file imported into the Skyline document.", 1, 0); var exeDir = Path.GetDirectoryName(Assembly.GetExecutingAssembly().Location); if (exeDir == null) { logger.LogError("Cound not get path to the Skyline report file"); return false; } var skyrFile = Path.Combine(exeDir, "FileAcquisitionTime.skyr"); var reportFile = Path.Combine(SkylineFileDir, "AcquisitionTimes.csv"); // Export a report from the given Skyline file var args = string.Format( @" --in=""{0}"" --report-conflict-resolution=overwrite --report-add=""{1}"" --report-name=""{2}"" --report-file=""{3}""", SkylineFilePath, skyrFile, "AcquisitionTimes", reportFile); var procInfo = new ProcessInfo(AutoQCForm.SkylineRunnerPath, AutoQCForm.SKYLINE_RUNNER, args, args); if (!processControl.RunProcess(procInfo)) { logger.LogError("Error getting the last acquired file date from the Skyline document."); return false; } // Read the exported report to get the last AcquiredTime for imported results in the Skyline doucment. if (!File.Exists(reportFile)) { logger.LogError("Could not find report outout {0}", reportFile); return false; } try { LastAcquiredFileDate = GetLastAcquiredFileDate(reportFile, logger); if (!LastAcquiredFileDate.Equals(DateTime.MinValue)) { logger.Log("The most recent acquisition date in the Skyline document is {0}", LastAcquiredFileDate); } else { logger.Log("The Skyline document does not have any imported results."); } } catch (IOException e) { logger.LogError("Exception reading file {0}. Exception details are: ", reportFile); logger.LogException(e); return false; } return true; }
private static DateTime GetLastAcquiredFileDate(string reportFile, IAutoQCLogger logger) { var lastAcq = new DateTime(); using (var reader = new StreamReader(reportFile)) { string line; // Read the column headers var first = true; while ((line = reader.ReadLine()) != null) { if (first) { first = false; continue; } var values = line.Split(','); if (values.Length == 3) { DateTime acqDate = new DateTime(); try { acqDate = DateTime.Parse(values[2]); } catch (Exception e) { logger.LogError("Error parsing acquired time from Skyline report: {0}", reportFile); logger.LogException(e); } if (acqDate.CompareTo(lastAcq) == 1) { lastAcq = acqDate; } } } } return lastAcq; }