public void TestDeepCopy()
{
var p = new Patient();
p.Name = new List <HumanName>();
p.Name.Add(HumanName.ForFamily("Kramer").WithGiven("Ewout"));
p.Name.Add(HumanName.ForFamily("Kramer").WithGiven("Wouter"));
p.SetExtension("http://test.nl/test", new FhirString("Hello, world"));
var p2 = (Patient)p.DeepCopy();
Assert.IsTrue(p2 is Patient);
Assert.AreNotEqual(p, p2);
Assert.IsNotNull(p2.Name);
Assert.AreNotEqual(p.Name, p2.Name);
Assert.AreEqual(p.Name[0].Family.First(), p2.Name[0].Family.First());
Assert.AreEqual(p.Name[0].Given.First(), p2.Name[0].Given.First());
Assert.AreEqual(p.Name[1].Family.First(), p2.Name[1].Family.First());
Assert.AreEqual(p.Name[1].Given.First(), p2.Name[1].Given.First());
var ext = p.GetExtension("http://test.nl/test");
var ext2 = p2.GetExtension("http://test.nl/test");
Assert.AreNotEqual(ext, ext2);
Assert.AreNotEqual(ext.Value, ext2.Value);
Assert.AreEqual(((FhirString)ext.Value).Value, ((FhirString)ext2.Value).Value);
}
public void Test_Init()
{
FHIRbase = new FHIRbaseApi();
CommonPatient = (Patient)FhirParser.ParseFromJson(File.ReadAllText("Examples/common_patient.json"));
SimplePatient = new Patient();
SimplePatient.Name.Add(HumanName.ForFamily("Hello").WithGiven("World"));
SimplePatient.Telecom.Add(new ContactPoint
{
System = ContactPoint.ContactPointSystem.Phone,
Use = ContactPoint.ContactPointUse.Mobile,
Value = "123456789"
});
RemovedPatient = FHIRbase.Search("Patient");
foreach (var entryComponent in RemovedPatient.Entry)
{
FHIRbase.Delete(entryComponent.Resource);
}
SearchPatients = new List <Patient>
{
(Patient)FHIRbase.Create(SimplePatient),
(Patient)FHIRbase.Create(SimplePatient),
(Patient)FHIRbase.Create(SimplePatient),
(Patient)FHIRbase.Create(CommonPatient),
(Patient)FHIRbase.Create(CommonPatient),
(Patient)FHIRbase.Create(CommonPatient),
(Patient)FHIRbase.Create(CommonPatient)
};
}
public void TestNullExtensionRemoval()
{
var p = new Patient
{
Extension = new List <Extension>
{
new Extension("http://hl7.org/fhir/Profile/iso-21090#qualifier", new Code("VV")),
null
},
Contact = new List <Patient.ContactComponent>
{
null,
new Patient.ContactComponent {
Name = HumanName.ForFamily("Kramer")
},
}
};
var xml = FhirXmlSerializer.SerializeToString(p);
var p2 = (new FhirXmlParser()).Parse <Patient>(xml);
Assert.AreEqual(1, p2.Extension.Count);
Assert.AreEqual(1, p2.Contact.Count);
}
public void TestSigning()
{
Bundle b = new Bundle();
b.Title = "Updates to resource 233";
b.Id = new Uri("urn:uuid:0d0dcca9-23b9-4149-8619-65002224c3");
b.LastUpdated = new DateTimeOffset(2012, 11, 2, 14, 17, 21, TimeSpan.Zero);
b.AuthorName = "Ewout Kramer";
ResourceEntry <Patient> p = new ResourceEntry <Patient>();
p.Id = new ResourceIdentity("http://test.com/fhir/Patient/233");
p.Resource = new Patient();
p.Resource.Name = new List <HumanName> {
HumanName.ForFamily("Kramer").WithGiven("Ewout")
};
b.Entries.Add(p);
var certificate = getCertificate();
var bundleData = FhirSerializer.SerializeBundleToXmlBytes(b);
var bundleXml = Encoding.UTF8.GetString(bundleData);
var bundleSigned = XmlSignatureHelper.Sign(bundleXml, certificate);
_signedXml = bundleSigned;
using (var response = postBundle(bundleSigned))
{
if (response.StatusCode != HttpStatusCode.OK)
{
TestResult.Fail("Server refused POSTing signed document at /");
}
}
}
private Patient createData()
{
var result = new Patient()
{
Active = true, Gender = AdministrativeGender.Male
};
result.Name.Add(HumanName.ForFamily("Kramer").WithGiven("Ewout"));
return(result);
}
public void TryScriptInject()
{
var x = new Patient();
x.Name.Add(HumanName.ForFamily("<script language='javascript'></script>"));
var xml = FhirXmlSerializer.SerializeToString(x);
Assert.IsFalse(xml.Contains("<script"));
}
public void ClientForPPT()
{
var client = new FhirClient(new Uri("http://hl7connect.healthintersections.com.au/svc/fhir/patient/"));
// Note patient is a ResourceEntry<Patient>, not a Patient
var patEntry = client.Read <Patient>("1");
var pat = patEntry.Resource;
pat.Name.Add(HumanName.ForFamily("Kramer").WithGiven("Ewout"));
client.Update <Patient>(patEntry);
}
public void Shold_ReadPatients_When_KeyIsValid()
{
// Setup mock fhir client and patient response
Mock <IFhirClient> mockClient = new Mock <IFhirClient>();
Patient res = new Patient();
res.Name.Add(HumanName.ForFamily("Doe").WithGiven("John"));
mockClient.Setup(x => x.Read <DomainResource>(It.IsAny <string>(), It.IsAny <string>(), null)).Returns(res);
// Create service to tests
IFhirService service = new TestService(mockClient.Object);
// Execute the request to read patient's data
Key key = Key.Create("Patient");
ServerFhirResponse response = service.Read(key);
// Verify the response
Assert.Equal(res.Name[0].Family, ((Patient)response.Resource).Name[0].Family);
}
public void Test_Patient_CRUD()
{
var createdPatient = FhirResourceHelper.CreatePatient();
Assert.That(createdPatient, Is.Not.Null);
Assert.That(createdPatient.VersionId, Is.Not.Empty);
var patient = Client.Read <Patient>(string.Format("Patient/{0}", createdPatient.Id));
Assert.That(patient, Is.Not.Null);
Assert.That(patient.VersionId, Is.Not.Empty);
createdPatient.Name.Add(HumanName.ForFamily("Kramer").WithGiven("Hello"));
var updatedPatient = Client.Update(createdPatient);
Assert.That(createdPatient.VersionId, Is.Not.EqualTo(updatedPatient.VersionId));
Assert.That(updatedPatient.Name.Exists(x => x.Given.Any(y => y == "Hello")), Is.True);
Client.Delete(updatedPatient);
}
public void TestSigning()
{
Bundle b = new Bundle();
b.Title = "Updates to resource 233";
b.Id = new Uri("urn:uuid:0d0dcca9-23b9-4149-8619-65002224c3");
b.LastUpdated = new DateTimeOffset(2012, 11, 2, 14, 17, 21, TimeSpan.Zero);
b.AuthorName = "Ewout Kramer";
ResourceEntry <Patient> p = new ResourceEntry <Patient>();
p.Id = new ResourceIdentity("http://test.com/fhir/Patient/233");
p.Resource = new Patient();
p.Resource.Name = new List <HumanName> {
HumanName.ForFamily("Kramer").WithGiven("Ewout")
};
b.Entries.Add(p);
var myAssembly = typeof(TestXmlSignature).Assembly;
var stream = myAssembly.GetManifestResourceStream("Spark.Tests.spark.pfx");
var data = new byte[stream.Length];
stream.Read(data, 0, (int)stream.Length);
var certificate = new X509Certificate2(data);
var bundleData = FhirSerializer.SerializeBundleToXmlBytes(b);
var bundleXml = Encoding.UTF8.GetString(bundleData);
var bundleSigned = XmlSignatureHelper.Sign(bundleXml, certificate);
Assert.IsTrue(XmlSignatureHelper.IsSigned(bundleSigned));
Assert.IsTrue(XmlSignatureHelper.VerifySignature(bundleSigned));
var changedBundle = bundleSigned.Replace("<name>Ewout", "<name>Ewald");
Assert.AreEqual(bundleSigned.Length, changedBundle.Length);
Assert.IsFalse(XmlSignatureHelper.VerifySignature(changedBundle));
}
// When button 2 is clikced, create patient
private void button2_Click(object sender, EventArgs e)
{
// Edit status text
createPatientStatus.Text = "Creating...";
// Set FHIR endpoint and create client
var endpoint = new Uri("http://fhirtest.uhn.ca/baseDstu2");
var client = new FhirClient(endpoint);
// Create new patient birthdate and name
var pat = new Patient()
{
BirthDate = birthDate.Text, Name = new List <HumanName>()
};
pat.Name.Add(HumanName.ForFamily(lastName.Text).WithGiven(givenName.Text));
// Upload to server
//client.ReturnFullResource = true;
client.Create(pat);
createPatientStatus.Text = "Created!";
}
public static Patient CreateTestPatient(string Mrn = "", string FhirId = "")
{
string PatientMRNIdentifer = Mrn;
if (string.IsNullOrWhiteSpace(PatientMRNIdentifer))
{
PatientMRNIdentifer = Guid.NewGuid().ToString();
}
//Add a Patient resource by Create
Patient Pat = new Patient();
if (!string.IsNullOrWhiteSpace(FhirId))
{
Pat.Id = FhirId;
}
Pat.Name.Add(HumanName.ForFamily("TestPatient").WithGiven("Test"));
Pat.BirthDateElement = new Date("1979-09-30");
Pat.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, PatientMRNIdentifer));
Pat.Gender = AdministrativeGender.Unknown;
return(Pat);
}
public async Task GivenRedactAnonymizationConfig_WhenAnonymizeResource_ThenPropertiesShouldBeRedacted()
{
string configurationContent =
@"
{
""fhirPathRules"": [
{
""path"": ""Patient.name"",
""method"": ""redact""
}
]
}";
Patient patient = new Patient();
patient.Name.Add(HumanName.ForFamily("Test"));
IAnonymizer anonymizer = await CreateAnonymizerFromConfigContent(configurationContent);
ResourceElement resourceElement = anonymizer.Anonymize(new ResourceElement(patient.ToTypedElement()));
Patient anonymizedResource = resourceElement.Instance.ToPoco <Patient>();
Assert.Empty(anonymizedResource.Name);
}
public async Task GivenSubstituteAnonymizationConfig_WhenAnonymizeResource_ThenSubstitutedNodeShouldBeReturned()
{
string configurationContent =
@"
{
""fhirPathRules"": [
{
""path"": ""Patient.name.family"",
""method"": ""substitute"",
""replaceWith"": ""test""
}
]
}";
Patient patient = new Patient();
patient.Name.Add(HumanName.ForFamily("input"));
IAnonymizer anonymizer = await CreateAnonymizerFromConfigContent(configurationContent);
ResourceElement resourceElement = anonymizer.Anonymize(new ResourceElement(patient.ToTypedElement()));
Patient anonymizedResource = resourceElement.Instance.ToPoco <Patient>();
Assert.Equal("test", anonymizedResource.Name.First().Family);
}
public void Test_DeleteHistoryIndexes()
{
FhirClient clientFhir = new FhirClient(StaticTestData.FhirEndpoint(), false);
clientFhir.Timeout = 1000 * 720; // give the call a while to execute (particularly while debugging).
string PatientOneResourceId = Guid.NewGuid().ToString();
string PatientOneMRNIdentifer = Guid.NewGuid().ToString();
//Add a Patient resource by Create
Patient PatientOne = new Patient();
PatientOne.Id = PatientOneResourceId;
PatientOne.Name.Add(HumanName.ForFamily("TestPatient").WithGiven("Test"));
PatientOne.BirthDateElement = new Date("1979-09-30");
PatientOne.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, PatientOneMRNIdentifer));
PatientOne.Gender = AdministrativeGender.Unknown;
Patient PatientResult = null;
try
{
PatientResult = clientFhir.Update <Patient>(PatientOne);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on Patient resource Update: " + Exec.Message);
}
Assert.NotNull(PatientResult, "Resource create by Updated returned resource of null");
PatientResult = null;
//Update the patient again to ensure there are History indexes to delete
try
{
PatientResult = clientFhir.Update <Patient>(PatientOne);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on Patient resource Update: " + Exec.Message);
}
Assert.NotNull(PatientResult, "Resource create by Updated returned resource of null");
//------------------------------------------------------------------------------------
// ------------ Base Operation, limited types by parameters --------------------------
//------------------------------------------------------------------------------------
//Now setup to use the base operation $delete-history-indexes
//Parameter Resource
Parameters ParametersIn = new Parameters();
//ParametersIn.Id = Guid.NewGuid().ToString();
ParametersIn.Parameter = new List <Parameters.ParameterComponent>();
var ParamOne = new Parameters.ParameterComponent();
ParametersIn.Parameter.Add(ParamOne);
ParamOne.Name = "ResourceType";
ParamOne.Value = new FhirString(FHIRAllTypes.Patient.GetLiteral());
Parameters ParametersResult = null;
try
{
var ResourceResult = clientFhir.WholeSystemOperation(OperationName, ParametersIn);
ParametersResult = ResourceResult as Parameters;
}
catch (Exception Exec)
{
Assert.True(false, $"Exception thrown on Operation call to ${OperationName}: " + Exec.Message);
}
Assert.NotNull(ParametersResult, "Resource create by Updated returned resource of null");
Assert.NotNull(ParametersResult.Parameter, "ParametersResult.Parameter is null");
Assert.AreEqual(ParametersResult.Parameter.Count(), 1, "ParametersResult.Parameter contains more than one parameter.");
Assert.AreEqual(ParametersResult.Parameter[0].Name, $"{FHIRAllTypes.Patient.GetLiteral()}_TotalIndexesDeletedCount", "ParametersResult.Parameter.Name not as expected.");
Assert.IsInstanceOf <FhirDecimal>(ParametersResult.Parameter[0].Value, "ParametersResult.Parameter.Value expected FhirDecimal.");
Assert.Greater((ParametersResult.Parameter[0].Value as FhirDecimal).Value, 0, "ParametersResult.Parameter.Value expected to be greater than 0.");
ParametersResult = null;
//------------------------------------------------------------------------------------
// ------------ Resource Base Operation ALL resource ResourceType = *----------------------------------------------
//------------------------------------------------------------------------------------
//Now setup to use the base operation $delete-history-indexes
//Parameter Resource
ParametersIn = new Parameters();
ParametersIn.Id = Guid.NewGuid().ToString();
ParametersIn.Parameter = new List <Parameters.ParameterComponent>();
ParamOne = new Parameters.ParameterComponent();
ParametersIn.Parameter.Add(ParamOne);
ParamOne.Name = "ResourceType";
ParamOne.Value = new FhirString("*");
ParametersResult = null;
try
{
var ResourceResult = clientFhir.WholeSystemOperation(OperationName, ParametersIn);
ParametersResult = ResourceResult as Parameters;
}
catch (Exception Exec)
{
Assert.True(false, $"Exception thrown on Operation call to ${OperationName}: " + Exec.Message);
}
Assert.NotNull(ParametersResult, "Resource create by Updated returned resource of null");
Assert.NotNull(ParametersResult.Parameter, "ParametersResult.Parameter is null");
Assert.AreEqual(ParametersResult.Parameter.Count(), ModelInfo.SupportedResources.Count, "ParametersResult.Parameter.Count Not equal to Supported resource total.");
ParametersResult = null;
//------------------------------------------------------------------------------------
// ------------ Resource Type Operation ----------------------------------------------
//------------------------------------------------------------------------------------
//Update the patient again to ensure there are History indexes to delete
PatientResult = null;
try
{
PatientResult = clientFhir.Update <Patient>(PatientOne);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on Patient resource Update: " + Exec.Message);
}
Assert.NotNull(PatientResult, "Resource create by Updated returned resource of null");
ParametersIn = new Parameters();
ParametersIn.Id = Guid.NewGuid().ToString();
ParametersResult = null;
try
{
var ResourceResult = clientFhir.TypeOperation <Patient>(OperationName, ParametersIn);
ParametersResult = ResourceResult as Parameters;
}
catch (Exception Exec)
{
Assert.True(false, $"Exception thrown on Operation call to ${OperationName}: " + Exec.Message);
}
Assert.NotNull(ParametersResult, "Resource create by Updated returned resource of null");
Assert.NotNull(ParametersResult.Parameter, "ParametersResult.Parameter is null");
Assert.AreEqual(ParametersResult.Parameter.Count(), 1, "ParametersResult.Parameter contains more than one parameter.");
Assert.AreEqual(ParametersResult.Parameter[0].Name, $"{FHIRAllTypes.Patient.GetLiteral()}_TotalIndexesDeletedCount", "ParametersResult.Parameter.Name not as expected.");
Assert.IsInstanceOf <FhirDecimal>(ParametersResult.Parameter[0].Value, "ParametersResult.Parameter.Value expected FhirDecimal.");
Assert.Greater((ParametersResult.Parameter[0].Value as FhirDecimal).Value, 0, "ParametersResult.Parameter.Value expected to be greater than 0.");
//--- Clean Up ---------------------------------------------------------
//Clean up by deleting all Test Patients
SearchParams sp = new SearchParams().Where($"identifier={StaticTestData.TestIdentiferSystem}|");
try
{
clientFhir.Delete("Patient", sp);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on conditional delete of resource Patient: " + Exec.Message);
}
}
public void Test_ConditionalCreate()
{
Hl7.Fhir.Rest.FhirClient clientFhir = new Hl7.Fhir.Rest.FhirClient(StaticTestData.FhirEndpoint(), false);
clientFhir.Timeout = 1000 * 600; // give the call a while to execute (particularly while debugging).
string TempResourceVersion = string.Empty;
string TempResourceId = string.Empty;
//Best to have this clean up here as things can get out of
//synch with the database when debugging.
//We always need a clean db to start run.
var sp = new SearchParams().Where("identifier=http://TestingSystem.org/id|");
try
{
clientFhir.Delete("Patient", sp);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on conditional delete of resource G: " + Exec.Message);
}
// Prepare test patient
Patient PatientOne = new Patient();
PatientOne.Name.Add(HumanName.ForFamily("FhirMan").WithGiven("Sam"));
PatientOne.BirthDateElement = new Date("1970-01");
PatientOne.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, "5"));
SearchParams SearchParams = new SearchParams().Where("identifier=5");
try
{
var ResultOne = clientFhir.Create(PatientOne, SearchParams);
TempResourceId = ResultOne.Id;
TempResourceVersion = ResultOne.VersionId;
}
catch (FhirOperationException execOper)
{
Assert.Fail("Exception was thrown on Condition Create, message was: " + execOper.Message);
}
try
{
//This will return status OK but does not commit the resource and therefore
//does not increment the resource version number
clientFhir.Create(PatientOne, SearchParams);
}
catch (FhirOperationException execOper)
{
Assert.Fail("Exception was thrown on Condition Create, message was: " + execOper.Message);
}
try
{
//This will return status OK but does not commit the resource and therefore
//does not increment the resource version number
var PatientResult = (Patient)clientFhir.Get($"{StaticTestData.FhirEndpoint()}/Patient/{TempResourceId}");
Assert.AreEqual(TempResourceVersion, PatientResult.VersionId, "The Version Id was not correct post Conditional Create when Resource was found.");
}
catch (FhirOperationException execOper)
{
Assert.Fail("Exception was thrown on Condition Create get operation, message was: " + execOper.Message);
}
// Create another Patient with the same name
Patient PatientTwo = new Patient();
PatientTwo.Name.Add(HumanName.ForFamily("FhirMan").WithGiven("Sam"));
PatientTwo.BirthDateElement = new Date("1970-01");
PatientTwo.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, "6"));
try
{
var ResultTwo = clientFhir.Create(PatientTwo);
}
catch (FhirOperationException execOper)
{
Assert.Fail("Exception was thrown on Condition Create, message was: " + execOper.Message);
}
//Now try an Create another again with a search on the Name
//This should fail as it will resolve to many resource
Patient PatientThree = new Patient();
PatientThree.Name.Add(HumanName.ForFamily("FhirMan").WithGiven("Sam"));
PatientThree.BirthDateElement = new Date("1970-01");
PatientThree.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, "7"));
SearchParams = new SearchParams().Where("family=FhirMan").Where("given=Sam");
try
{
var ResultThree = clientFhir.Create(PatientTwo, SearchParams);
Assert.IsNull(ResultThree, "ResultThree should be null as the ConditionaCreate search parameters should find many resource");
}
catch (FhirOperationException execOper)
{
Assert.AreEqual(System.Net.HttpStatusCode.PreconditionFailed, execOper.Status, "Did not get Http status 412 when resolving against many resources on ConditionalCreate");
}
//Clean up by deleting all resources created while also testing Conditional Delete many
sp = new SearchParams().Where("identifier=http://TestingSystem.org/id|");
try
{
clientFhir.Delete("Patient", sp);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on conditional delete of resource G: " + Exec.Message);
}
}
/// <summary>
/// Executes the specified arguments.
/// </summary>
/// <param name="arguments">The arguments.</param>
/// <returns>System.Int32.</returns>
/// <remarks>N/A</remarks>
public override int Execute(Arguments arguments)
{
// Get us the needed parameters first
//
var url = arguments["url"];
var id = arguments["id"];
var name = arguments["name"];
var firstname = arguments["firstname"];
var gender = arguments["gender"];
var dob = arguments["dob"];
var phone = arguments["phone"];
var email = arguments["email"];
// Try to retrieve patient from server and update it
try
{
// Get patient representation from server
//
#region retrieve patient
var client = new FhirClient(url);
var identity = ResourceIdentity.Build("Patient", id);
var entry = client.Read(identity) as ResourceEntry <Patient>;
var patient = entry.Resource as Patient;
if (patient == null)
{
Console.WriteLine("Could not retrieve patient {0} from server {1}", id, url);
return(1);
}
#endregion
// We have the patient now modify local representation
//
#region prepare patient update
if (!(String.IsNullOrEmpty(name) && !String.IsNullOrEmpty(firstname)))
{
patient.Name = new List <HumanName>();
patient.Name.Add(HumanName.ForFamily(name).WithGiven(firstname));
}
if (!String.IsNullOrEmpty(gender))
{
patient.Gender = new CodeableConcept("http://dummy.org/gender", gender, gender);
}
if (!String.IsNullOrEmpty(dob))
{
var birthdate = DateTime.ParseExact(dob, "dd/MM/yyyy", new CultureInfo("en-US"));
patient.BirthDate = birthdate.ToString("s");
}
patient.Telecom = new List <Contact>();
if (!String.IsNullOrEmpty(phone))
{
patient.Telecom.Add(new Contact()
{
Value = phone,
System = Contact.ContactSystem.Phone,
Use = Contact.ContactUse.Home
});
}
if (!String.IsNullOrEmpty(email))
{
patient.Telecom.Add(new Contact()
{
Value = email,
System = Contact.ContactSystem.Email,
Use = Contact.ContactUse.Home
});
}
#endregion
// Finally send the update to the server
//
#region do patient update
entry.Resource = patient;
client.Update(entry, false);
Console.WriteLine("Patient {0} updated on server {1}", id, url);
return(0);
#endregion
}
catch (Exception e)
{
Console.WriteLine(e.Message);
return(1);
}
}
public void Test_ConditionalRead()
{
Hl7.Fhir.Rest.FhirClient clientFhir = new Hl7.Fhir.Rest.FhirClient(StaticTestData.FhirEndpoint(), false);
clientFhir.Timeout = 1000 * 720; // give the call a while to execute (particularly while debugging).
string PatientOneId = string.Empty;
string PatientOneVersion = string.Empty;
DateTimeOffset?PatientOneModified = null;
// Prepare 3 test patients
Patient PatientOne = new Patient();
string TestPat1 = Guid.NewGuid().ToString();
PatientOne.Id = TestPat1;
PatientOne.Name.Add(HumanName.ForFamily("FhirMan").WithGiven("Sam"));
PatientOne.BirthDateElement = new Date("1970-01");
PatientOne.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, "6"));
Patient ResultOne = null;
try
{
ResultOne = clientFhir.Update(PatientOne);
PatientOneId = ResultOne.Id;
PatientOneVersion = ResultOne.VersionId;
PatientOneModified = ResultOne.Meta.LastUpdated;
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on resource Get: " + Exec.Message);
}
Patient PatientTwo = null;
try
{
//Resource has not changed so should return a 304 Not Modified
PatientTwo = clientFhir.Read <Patient>($"{StaticTestData.FhirEndpoint()}/Patient/{PatientOneId}", PatientOneVersion, PatientOneModified);
Assert.Fail("Conditional Read is expected to throw an exception due to bug in FHIR .NET API");
}
catch (FhirOperationException ExecOp)
{
//Catch the error and check it is a 304 http status.
Assert.True(true, "FhirOperationException should be thrown on resource Read: " + ExecOp.Message);
Assert.IsTrue(ExecOp.Status.IsRedirection());
}
PatientTwo = null;
PatientOneModified = PatientOneModified.Value.AddMinutes(-1);
try
{
//If-Modified-Since has been pushed back 1 min so we should get a resource back this time
PatientTwo = clientFhir.Read <Patient>($"{StaticTestData.FhirEndpoint()}/Patient/{PatientOneId}", PatientOneVersion, PatientOneModified);
Assert.NotNull(PatientTwo, "Not Resource returned when 1 min subtracted from last-modified on Conditional Read.");
//reset the PatientOneModified
PatientOneModified = PatientTwo.Meta.LastUpdated;
}
catch (FhirOperationException ExecOp)
{
Assert.True(false, "FhirOperationException thrown on resource Read: " + ExecOp.Message);
Assert.IsTrue(ExecOp.Status.IsRedirection());
}
PatientTwo = null;
PatientOneVersion = "xxxxx";
try
{
//If-None-Match version has been set to not match so we should get a resource back this time
PatientTwo = clientFhir.Read <Patient>($"{StaticTestData.FhirEndpoint()}/Patient/{PatientOneId}", PatientOneVersion, PatientOneModified);
Assert.NotNull(PatientTwo, "Not Resource returned when Resource Version did not match active resource Version on Conditional Read.");
}
catch (FhirOperationException ExecOp)
{
Assert.True(false, "FhirOperationException thrown on resource Read: " + ExecOp.Message);
}
//Clean up by deleting all Test Patients
var sp = new SearchParams().Where("identifier=" + StaticTestData.TestIdentiferSystem + "|");
try
{
clientFhir.Delete("Patient", sp);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on conditional delete of resource G: " + Exec.Message);
}
}
public void Setup()
{
Server = StaticTestData.StartupServer();
clientFhir = new Hl7.Fhir.Rest.FhirClient(StaticTestData.FhirEndpoint(), false);
clientFhir.Timeout = 1000 * 720; // give the call a while to execute (particularly while debugging).
//This Set up creates an Observation linked to a Patient as the 'subject' and an Organization as the 'performer'
// Observation1
// --> Patient
// --> Organization - > Endpoint
// --> Observation2
// ----> Observation3
//Add a Endpoint resource
//Loop only here for load testing
for (int i = 0; i < 1; i++)
{
Endpoint EndpointOnex = new Endpoint();
EndpointOnex.Name = EndpointOneName;
EndpointOneIdentifer = Guid.NewGuid().ToString();
EndpointOnex.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, EndpointOneIdentifer));
Endpoint EndPointOneResult = null;
try
{
EndPointOneResult = clientFhir.Create(EndpointOnex);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on resource Create: " + Exec.Message);
}
Assert.NotNull(EndPointOneResult, "Resource created but returned resource is null");
EndpointOneResourceId = EndPointOneResult.Id;
}
//Add a Endpoint resource
Endpoint EndpointTwo = new Endpoint();
EndpointTwo.Name = EndpointOneName;
string EndpointTwoIdentifer = Guid.NewGuid().ToString();
EndpointTwo.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, EndpointTwoIdentifer));
Endpoint EndPointTwoResult = null;
try
{
EndPointTwoResult = clientFhir.Create(EndpointTwo);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on resource Create: " + Exec.Message);
}
Assert.NotNull(EndPointTwoResult, "Resource created but returned resource is null");
string EndpointTwoResourceId = EndPointTwoResult.Id;
//Add a Organization resource by Update
Organization OrganizationOne = new Organization();
OrganizationOne.Name = OrganizationOneName;
OrganizationOneIdentifer = Guid.NewGuid().ToString();
OrganizationOne.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, OrganizationOneIdentifer));
OrganizationOne.Endpoint = new List <ResourceReference>()
{
new ResourceReference($"{ResourceType.Endpoint.GetLiteral()}/{EndpointOneResourceId}")
};
Organization OrganizationOneResult = null;
try
{
OrganizationOneResult = clientFhir.Create(OrganizationOne);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on resource Create: " + Exec.Message);
}
Assert.NotNull(OrganizationOneResult, "Resource created but returned resource is null");
OrganizationOneResourceId = OrganizationOneResult.Id;
//Patient where Obs.performer -> Org.name
// Add a Patient to Link to a Observation below ================================
//Loop only here for load testing debugging
for (int i = 0; i < 10; i++)
{
Patient PatientOne = new Patient();
PatientOne.Name.Add(HumanName.ForFamily(PatientOneFamily).WithGiven("Test"));
PatientOne.BirthDateElement = new Date("1979-09-30");
PatientOneMRNIdentifer = Guid.NewGuid().ToString();
PatientOne.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, PatientOneMRNIdentifer));
PatientOne.Gender = AdministrativeGender.Unknown;
PatientOne.ManagingOrganization = new ResourceReference($"{ResourceType.Organization.GetLiteral()}/{OrganizationOneResourceId}");
Patient PatientResult = null;
try
{
PatientResult = clientFhir.Create(PatientOne);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on resource Create: " + Exec.Message);
}
Assert.NotNull(PatientResult, "Resource created but returned resource is null");
PatientResourceId = PatientResult.Id;
}
//Here we set up 3 observations linked in a chain Obs1 -> Obs2 - > Obs3 to test recursive includes
// Add Observation 3 Linked to no other observation
// This is to test recursive includes
Observation ObsResourceThree = new Observation();
ObsResourceThree.Status = ObservationStatus.Final;
ObsResourceThree.Code = new CodeableConcept("http://somesystem.net/ObSystem", "WCC");
ObservationThreeIdentifer = Guid.NewGuid().ToString();
ObsResourceThree.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, ObservationTwoIdentifer));
ObsResourceThree.Subject = new ResourceReference($"{ResourceType.Patient.GetLiteral()}/{PatientResourceId}");
ObsResourceThree.Performer = new List <ResourceReference>()
{
new ResourceReference($"{ResourceType.Organization.GetLiteral()}/{OrganizationOneResourceId}")
};
Observation ObservationThreeResult = null;
try
{
ObservationThreeResult = clientFhir.Create(ObsResourceThree);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on Observation resource two create: " + Exec.Message);
}
Assert.NotNull(ObservationThreeResult, "Resource created but returned resource is null");
ObservationThreeResourceId = ObservationThreeResult.Id;
ObservationThreeResult = null;
// Add Observation 2 Linked to the Observation3 above and Patient above
// This is to test recursive includes
Observation ObsResourceTwo = new Observation();
ObsResourceTwo.Status = ObservationStatus.Final;
ObsResourceTwo.Code = new CodeableConcept("http://somesystem.net/ObSystem", "WCC");
ObservationTwoIdentifer = Guid.NewGuid().ToString();
ObsResourceTwo.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, ObservationTwoIdentifer));
ObsResourceTwo.Subject = new ResourceReference($"{ResourceType.Patient.GetLiteral()}/{PatientResourceId}");
ObsResourceTwo.Performer = new List <ResourceReference>()
{
new ResourceReference($"{ResourceType.Organization.GetLiteral()}/{OrganizationOneResourceId}")
};
ObsResourceTwo.Related = new List <Observation.RelatedComponent>();
var RelatedArtifact2 = new Observation.RelatedComponent();
RelatedArtifact2.Target = new ResourceReference($"{ResourceType.Observation.GetLiteral()}/{ObservationThreeResourceId}");
ObsResourceTwo.Related.Add(RelatedArtifact2);
Observation ObservationTwoResult = null;
try
{
ObservationTwoResult = clientFhir.Create(ObsResourceTwo);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on Observation resource two create: " + Exec.Message);
}
Assert.NotNull(ObservationTwoResult, "Resource created but returned resource is null");
ObservationTwoResourceId = ObservationTwoResult.Id;
ObservationTwoResult = null;
// Add Observation1 linked to Observation 2 above and the Patient above ================================
Observation ObsResourceOne = new Observation();
ObsResourceOne.Status = ObservationStatus.Final;
ObsResourceOne.Code = new CodeableConcept("http://somesystem.net/ObSystem", "HB");
ObservationOneIdentifer = Guid.NewGuid().ToString();
ObsResourceOne.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, ObservationOneIdentifer));
ObsResourceOne.Subject = new ResourceReference($"{ResourceType.Patient.GetLiteral()}/{PatientResourceId}");
ObsResourceOne.Performer = new List <ResourceReference>()
{
new ResourceReference($"{ResourceType.Organization.GetLiteral()}/{OrganizationOneResourceId}")
};
ObsResourceOne.Related = new List <Observation.RelatedComponent>();
var RelatedArtifact1 = new Observation.RelatedComponent();
RelatedArtifact1.Target = new ResourceReference($"{ResourceType.Observation.GetLiteral()}/{ObservationTwoResourceId}");
ObsResourceOne.Related.Add(RelatedArtifact1);
Observation ObservationOneResult = null;
try
{
ObservationOneResult = clientFhir.Create(ObsResourceOne);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on resource Create: " + Exec.Message);
}
Assert.NotNull(ObservationOneResult, "Resource created but returned resource is null");
ObservationOneResourceId = ObservationOneResult.Id;
ObservationOneResult = null;
}
public void Test_PUT_IfMatch()
{
Hl7.Fhir.Rest.FhirClient clientFhir = new Hl7.Fhir.Rest.FhirClient(StaticTestData.FhirEndpoint(), false);
clientFhir.Timeout = 1000 * 720; // give the call a while to execute (particularly while debugging).
//Best to have this clean up here as things can get out of
//synch with the database when debugging.
//We always need a clean db to start run.
var sp = new SearchParams().Where("identifier=http://TestingSystem.org/id|");
try
{
clientFhir.Delete("Patient", sp);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on conditional delete of resource G: " + Exec.Message);
}
string PatientOneId = string.Empty;
string PatientOneVersion = string.Empty;
DateTimeOffset?PatientOneModified = null;
// Prepare Patient
Patient PatientOne = new Patient();
string TestPatIfMatch = Guid.NewGuid().ToString();
PatientOne.Id = TestPatIfMatch;
PatientOne.Name.Add(HumanName.ForFamily("IfMatch0").WithGiven("Test0"));
PatientOne.BirthDateElement = new Date("1970-01");
PatientOne.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, "AF28B8ED-B81A-41D4-96DE-9012ED1868BD"));
Patient ResultOne = null;
try
{
ResultOne = clientFhir.Update(PatientOne);
PatientOneId = ResultOne.Id;
PatientOneVersion = ResultOne.VersionId;
PatientOneModified = ResultOne.Meta.LastUpdated;
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on resource Get: " + Exec.Message);
}
ResultOne.Name.Clear();
ResultOne.Name.Add(HumanName.ForFamily("IfMatch1").WithGiven("Test1"));
Patient ResultTwo = null;
try
{
//Perform a Version aware update that should be successfully. This uses "if-match" HTTP Header.
ResultTwo = clientFhir.Update(ResultOne, true);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on resource Get: " + Exec.Message);
}
//Increment the last returned resource's version by one and then attempt a version aware update.
//This should fail with a HTTP Error '409 Conflict'
ResultTwo.VersionId = (Convert.ToInt32(ResultTwo.VersionId) + 1).ToString();
Patient ResultThree = null;
try
{
ResultThree = clientFhir.Update(ResultTwo, true);
}
catch (FhirOperationException execOper)
{
Assert.AreEqual(System.Net.HttpStatusCode.Conflict, execOper.Status, "Did not get Http status 409 Conflict on incorrect Version aware update.");
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on Version aware update: " + Exec.Message);
}
//Clean up by deleting all Test Patients
sp = new SearchParams().Where("identifier=http://TestingSystem.org/id|");
try
{
clientFhir.Delete("Patient", sp);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on conditional delete of resource G: " + Exec.Message);
}
}
public void Test_ConditionalUpdate()
{
Hl7.Fhir.Rest.FhirClient clientFhir = new Hl7.Fhir.Rest.FhirClient(StaticTestData.FhirEndpoint(), false);
clientFhir.Timeout = 1000 * 720; // give the call a while to execute (particularly while debugging).
// Prepare 3 test patients
Patient p1 = new Patient();
string TestPat1 = Guid.NewGuid().ToString();
p1.Id = TestPat1;
p1.Name.Add(HumanName.ForFamily("Postlethwaite").WithGiven("Brian"));
p1.BirthDateElement = new Date("1970-01");
p1.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, "1"));
var r1 = clientFhir.Update(p1);
Patient p2 = new Patient();
string TestPat2 = Guid.NewGuid().ToString();
p2.Id = TestPat2;
p2.Name.Add(HumanName.ForFamily("Portlethwhite").WithGiven("Brian"));
p2.BirthDateElement = new Date("1970-01");
p2.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, "1"));
var r2 = clientFhir.Update(p2);
Patient p3 = new Patient();
string TestPat3 = Guid.NewGuid().ToString();
p3.Id = TestPat3;
p3.Name.Add(HumanName.ForFamily("Dole").WithGiven("Bob"));
p3.BirthDateElement = new Date("1957-01");
p3.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, "1"));
var r3 = clientFhir.Update(p3);
// Test the conditional update now
// Try to update Bob Doles data
Patient p3a = new Patient();
p3a.Name.Add(HumanName.ForFamily("Dole").WithGiven("Bob"));
p3a.BirthDateElement = new Date("1957-01-12");
p3a.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, "1"));
SearchParams sp = new SearchParams().Where("name=Dole").Where("birthdate=1957-01");
var r3a = clientFhir.Update(p3a, sp);
Assert.AreEqual(TestPat3, r3a.Id, "pat3 should have been updated (not a new one created)");
Assert.AreEqual("1957-01-12", r3a.BirthDate, "Birth date should have been updated");
// Try to update Brian's data (which has multuple rows!)
Patient p1a = new Patient();
p1a.Name.Add(HumanName.ForFamily("Postlethwaite").WithGiven("Brian"));
p1a.BirthDateElement = new Date("1970-02");
p1a.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, "1"));
sp = new SearchParams().Where("identifier=1");
try
{
var r1a = clientFhir.Update(p1a, sp);
Assert.Fail("This identifier is used multiple times, the conditional update should have failed");
}
catch (FhirOperationException ex)
{
Assert.AreEqual(System.Net.HttpStatusCode.PreconditionFailed, ex.Status, "Expected failure of the update due to a pre-condition check");
}
// Try to update Bob Doles data with incorrect id
Patient p3b = new Patient();
p3b.Id = "NotTheCorrectId";
p3b.Name.Add(HumanName.ForFamily("Dole").WithGiven("Bob"));
p3b.BirthDateElement = new Date("1957-01-01");
p3b.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, "1"));
try
{
var r3b = clientFhir.Update(p3b, sp);
Assert.Fail("This identifier given in the resource Update does not match the Id in the resource located by search.");
}
catch (FhirOperationException ex)
{
Assert.AreEqual(System.Net.HttpStatusCode.PreconditionFailed, ex.Status, "Expected failure of the update due to a pre-condition check");
}
// Try to update New Patient resource where search returns zero hits and Resource is created occurs
Patient p4 = new Patient();
p4.Name.Add(HumanName.ForFamily("Dole4").WithGiven("John"));
p4.BirthDateElement = new Date("1957-01-01");
p4.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, "2"));
sp = new SearchParams().Where("identifier=http://TestingSystem.org/id|2");
Patient r4 = null;
try
{
r4 = clientFhir.Update(p4, sp);
}
catch (FhirOperationException ex)
{
Assert.True(false, "Update p4 failed" + ex.Message);
}
//Clean up by deleting all resources created while also testing Conditional Delete many
sp = new SearchParams().Where("identifier=http://TestingSystem.org/id|");
try
{
clientFhir.Delete("Patient", sp);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on conditional delete of resource G: " + Exec.Message);
}
}
private static Resource MediMobiExample()
{
var patient = new Patient
{
Id = "patient",
Identifier = new List <Identifier>
{
new Identifier("https://www.ehealth.fgov.be/standards/fhir/NamingSystem/ssin", "00.01.01-003.03")
},
Name = new List <HumanName> {
HumanName.ForFamily("Doe").WithGiven("Jane")
},
Gender = AdministrativeGender.Female,
Language = "nl-be",
Address = new List <Address>
{
new Address()
{
Line = new [] { "Astridstraat 192" },
City = "Zottegem",
PostalCode = "9620",
Use = Address.AddressUse.Home
}
},
Telecom = new List <ContactPoint>
{
new ContactPoint(ContactPoint.ContactPointSystem.Phone, ContactPoint.ContactPointUse.Mobile,
"+32478123456"),
new ContactPoint(ContactPoint.ContactPointSystem.Email, ContactPoint.ContactPointUse.Home,
"*****@*****.**")
}
};
var campus = new Location()
{
Id = "campus",
Name = "Hospital X - campus Ghent",
Address = new Address
{
Line = new List <string>()
{
"Steenweg 37"
},
PostalCode = "9000",
City = "Ghent"
}
};
var location = new Location
{
Id = "location",
Name = "Wachtzaal Orthopedie",
Alias = new [] { "Route 37" },
PartOf = new ResourceReference("#campus"),
Contained = new List <Resource> {
campus
}
};
var healthcareService = new HealthcareService()
{
Id = "healthcareService",
Identifier =
new List <Identifier> {
new Identifier("http://demohospital.mediligo.com/service", "orthopedics")
},
Specialty = new List <CodeableConcept> {
new CodeableConcept("http://snomed.info/sct", "394801008")
},
Name = "Orthopedie"
};
var x = new Appointment
{
Id = "example",
Contained = new List <Resource>
{
patient, location, healthcareService
},
Identifier =
new List <Identifier> {
new Identifier("http://demohospital.mediligo.com/appointement", "1234")
},
Status = Appointment.AppointmentStatus.Booked,
ServiceCategory = new List <CodeableConcept>
{
new CodeableConcept("https://demohospital.mediligo.com/serviceType", "shoulder-first-consult"),
new CodeableConcept("http://mediligo.com/fhir/MediMobi/CodeSystem/medimobi-appointment-class",
"consultation-mobile")
},
Start = new DateTimeOffset(2020, 10, 24, 10, 0, 0, TimeSpan.FromHours(1)),
End = new DateTimeOffset(2020, 10, 24, 11, 0, 0, TimeSpan.FromHours(1)),
Participant = new List <Appointment.ParticipantComponent>
{
new Appointment.ParticipantComponent {
Actor = new ResourceReference("#patient")
},
new Appointment.ParticipantComponent {
Actor = new ResourceReference("#location")
},
new Appointment.ParticipantComponent {
Actor = new ResourceReference("#healthcareService")
}
}
};
return(x);
}
static void Main(string[] args)
{
const string kDeviceId = "device-0001";
const string kObservationId = "bp-0001";
const string kPatientId = "patient-0001";
const string kPractitionerId = "practitioner-0001";
Patient patient = new Patient()
{
Id = kPatientId
};
patient.Name.Add(HumanName.ForFamily("Miranda").WithGiven("Jorge"));
Practitioner practitioner = new Practitioner()
{
Id = kPractitionerId
};
practitioner.Name.Add(HumanName.ForFamily("Banerjee").WithGiven("Suprateek"));
Device device = new Device()
{
Id = kDeviceId,
Manufacturer = "A&D",
Model = "UA-651BLE"
};
Observation observation = new Observation()
{
Id = kObservationId,
Device = new ResourceReference("Device/" + kDeviceId),
Subject = new ResourceReference("Patient" + kPatientId)
};
observation.Performer.Add(new ResourceReference("Practitioner" + kPractitionerId));
/* Systolic component */
Observation.ComponentComponent systolic = new Observation.ComponentComponent();
systolic.Code = new CodeableConcept();
systolic.Code.Coding.Add(new Coding("http://loinc.org", "8480 - 6"));
systolic.Code.Coding.Add(new Coding("http://snomed.info/sct", "271649006"));
systolic.Value = new Quantity()
{
Value = 107,
Unit = "mmHg",
Code = "mm[Hg]"
};
systolic.Interpretation = new CodeableConcept("http://hl7.org/fhir/v2/0078", "N", "normal");
/* Diastolic component */
Observation.ComponentComponent diastolic = new Observation.ComponentComponent();
diastolic.Code = new CodeableConcept("http://loinc.org", "8462-4");
diastolic.Code = new CodeableConcept("http://snomed.info/sct", "271650006");
diastolic.Value = new Quantity()
{
Value = 60,
Unit = "mmHg",
Code = "mm[Hg]"
};
diastolic.Interpretation = new CodeableConcept("http://hl7.org/fhir/v2/0078", "L", "low");
observation.Component.Add(systolic);
observation.Component.Add(diastolic);
string json = FhirSerializer.SerializeToJson(observation);
}
public void Test_CaseSensitive_FHIR_Id()
{
CleanUpByIdentifier(ResourceType.Patient);
Hl7.Fhir.Rest.FhirClient clientFhir = new Hl7.Fhir.Rest.FhirClient(StaticTestData.FhirEndpoint(), false);
clientFhir.Timeout = 1000 * 720; // give the call a while to execute (particularly while debugging).
//Add a Patient resource by Update
Patient PatientOne = new Patient();
string PatientOneResourceId = Guid.NewGuid().ToString().ToLower();
PatientOne.Id = PatientOneResourceId;
string PatientOneFamilyName = "TestPatientOne";
PatientOne.Name.Add(HumanName.ForFamily(PatientOneFamilyName).WithGiven("Test"));
PatientOne.BirthDateElement = new Date("1979-09-30");
string PatientOneMRNIdentifer = Guid.NewGuid().ToString();
PatientOne.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, PatientOneMRNIdentifer));
PatientOne.Gender = AdministrativeGender.Unknown;
Patient PatientResult = null;
try
{
PatientResult = clientFhir.Update(PatientOne);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on resource Create: " + Exec.Message);
}
Assert.NotNull(PatientResult, "Resource create by Updated returned resource of null");
PatientResult = null;
//Add a Patient resource by Update
Patient PatientTwo = new Patient();
string PatientTwoResourceId = PatientOneResourceId.ToUpper();
PatientTwo.Id = PatientTwoResourceId;
string PatientTwoFamilyName = "TestPatientTwo";
PatientTwo.Name.Add(HumanName.ForFamily(PatientTwoFamilyName).WithGiven("Test"));
PatientTwo.BirthDateElement = new Date("1979-09-30");
string PatientTwoMRNIdentifer = Guid.NewGuid().ToString();
PatientTwo.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, PatientOneMRNIdentifer));
PatientTwo.Gender = AdministrativeGender.Unknown;
PatientResult = null;
try
{
PatientResult = clientFhir.Update(PatientTwo);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on resource Create: " + Exec.Message);
}
Assert.NotNull(PatientResult, "Resource create by Updated returned resource of null");
PatientResult = null;
Bundle SearchResult = null;
try
{
SearchResult = clientFhir.SearchById<Patient>(PatientOneResourceId);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on resource Create: " + Exec.Message);
}
Assert.AreEqual(1, SearchResult.Entry.Count);
Assert.AreEqual(PatientOneFamilyName, (SearchResult.Entry[0].Resource as Patient).Name[0].Family);
SearchResult = null;
try
{
SearchResult = clientFhir.SearchById<Patient>(PatientTwoResourceId);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on resource Create: " + Exec.Message);
}
Assert.AreEqual(1, SearchResult.Entry.Count);
Assert.AreEqual(PatientTwoFamilyName, (SearchResult.Entry[0].Resource as Patient).Name[0].Family);
//--- Clean Up ---------------------------------------------------------
//Clean up by deleting all Test Patients
SearchParams sp = new SearchParams().Where($"identifier={StaticTestData.TestIdentiferSystem}|");
try
{
clientFhir.Delete("Patient", sp);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on conditional delete of resource Patient: " + Exec.Message);
}
}
/// <summary>
/// Executes the specified arguments.
/// </summary>
/// <param name="arguments">The arguments.</param>
/// <returns>System.Int32.</returns>
public override int Execute(Arguments arguments)
{
// Get us the needed parameters first
//
var url = arguments["url"];
var name = arguments["name"];
var firstname = arguments["firstname"];
var gender = arguments["gender"];
var dob = arguments["dob"];
var phone = arguments["phone"];
var email = arguments["email"];
// Create an in-memory representation of a Patient resource
var patient = new Patient();
if (!(String.IsNullOrEmpty(name) && !String.IsNullOrEmpty(firstname)))
{
patient.Name = new List <HumanName>();
patient.Name.Add(HumanName.ForFamily(name).WithGiven(firstname));
}
if (!String.IsNullOrEmpty(gender))
{
patient.Gender = new CodeableConcept("http://dummy.org/gender", gender, gender);
}
if (!String.IsNullOrEmpty(dob))
{
var birthdate = DateTime.ParseExact(dob, "dd/MM/yyyy", new CultureInfo("en-US"));
patient.BirthDate = birthdate.ToString("s");
}
patient.Telecom = new List <Contact>();
if (!String.IsNullOrEmpty(phone))
{
patient.Telecom.Add(new Contact()
{
Value = phone,
System = Contact.ContactSystem.Phone,
Use = Contact.ContactUse.Home
});
}
if (!String.IsNullOrEmpty(email))
{
patient.Telecom.Add(new Contact()
{
Value = email,
System = Contact.ContactSystem.Email,
Use = Contact.ContactUse.Home
});
}
try
{
var client = new FhirClient(url);
var entry = client.Create(patient);
if (entry == null)
{
Console.WriteLine("Couldn not register patient on server {0}", url);
return(1);
}
var identity = new ResourceIdentity(entry.Id);
ID = identity.Id;
Console.WriteLine("Registered patient {0} on server {1}", ID, url);
return(0);
}
catch (Exception e)
{
Console.WriteLine(e.Message);
return(1);
}
}
public void Test_BundleTransaction()
{
Hl7.Fhir.Rest.FhirClient clientFhir = new Hl7.Fhir.Rest.FhirClient(StaticTestData.FhirEndpoint(), false);
clientFhir.Timeout = 1000 * 1000; // give the call a while to execute (particularly while debugging).
//------------------------------------------------------------------------------------------------------
//Transaction Bundle 1 (Create) ---------------------------------------------------------------------------------
//------------------------------------------------------------------------------------------------------
Bundle TransBundle = new Bundle();
TransBundle.Id = Guid.NewGuid().ToString();
TransBundle.Type = Bundle.BundleType.Transaction;
TransBundle.Entry = new List <Bundle.EntryComponent>();
string PatientOneMRNIdentifer = Guid.NewGuid().ToString();
string OrganizationOneMRNIdentifer = Guid.NewGuid().ToString();
//Add a Patient resource by Create
Patient PatientOne = StaticTestData.CreateTestPatient(PatientOneMRNIdentifer);
string OrgOneResourceIdFulUrl = CreateFullUrlUUID(Guid.NewGuid().ToString());
PatientOne.ManagingOrganization = new ResourceReference()
{
Reference = OrgOneResourceIdFulUrl
};
var PatientEntry = new Bundle.EntryComponent();
TransBundle.Entry.Add(PatientEntry);
PatientEntry.Resource = PatientOne;
PatientEntry.Request = new Bundle.RequestComponent();
PatientEntry.Request.Method = Bundle.HTTPVerb.POST;
string PatientResourceIdFulUrl = CreateFullUrlUUID(Guid.NewGuid().ToString());
PatientEntry.FullUrl = PatientResourceIdFulUrl;
PatientEntry.Resource = PatientOne;
PatientEntry.Request = new Bundle.RequestComponent();
PatientEntry.Request.Method = Bundle.HTTPVerb.POST;
PatientEntry.Request.Url = "Patient";
//Add a Organization resource by Create
Organization OrganizationOne = new Organization();
OrganizationOne.Name = "Test OrganizationOne";
OrganizationOne.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, OrganizationOneMRNIdentifer));
var OrganizationOneEntry = new Bundle.EntryComponent();
TransBundle.Entry.Add(OrganizationOneEntry);
OrganizationOneEntry.Resource = OrganizationOne;
OrganizationOneEntry.Request = new Bundle.RequestComponent();
OrganizationOneEntry.Request.Method = Bundle.HTTPVerb.POST;
OrganizationOneEntry.FullUrl = OrgOneResourceIdFulUrl;
OrganizationOneEntry.Resource = OrganizationOne;
OrganizationOneEntry.Request = new Bundle.RequestComponent();
OrganizationOneEntry.Request.Method = Bundle.HTTPVerb.POST;
OrganizationOneEntry.Request.Url = "Organization";
Bundle TransactionResult = null;
try
{
TransactionResult = clientFhir.Transaction(TransBundle);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on POST Transaction bundle: " + Exec.Message);
}
Assert.True(TransactionResult.Type == Bundle.BundleType.TransactionResponse);
Assert.IsTrue(TransactionResult.Entry[0].Response.Status.Contains(System.Net.HttpStatusCode.Created.ToString()));
Assert.IsTrue(TransactionResult.Entry[1].Response.Status.Contains(System.Net.HttpStatusCode.Created.ToString()));
Patient TransactionResultPatient = TransactionResult.Entry[0].Resource as Patient;
Organization TransactionResultOrganization = TransactionResult.Entry[1].Resource as Organization;
string PatientOneResourceId = TransactionResult.Entry[0].Resource.Id;
string OrgOneResourceId = TransactionResult.Entry[1].Resource.Id;
//Check that the referance in the Patient to the Organization has been updated.
Assert.AreEqual(TransactionResultPatient.ManagingOrganization.Reference, $"Organization/{TransactionResultOrganization.Id}");
//Check the Response Etag matches the resource Version number
string PatientResourceVersionNumber = TransactionResultPatient.VersionId;
Assert.AreEqual(Common.Tools.HttpHeaderSupport.GetEntityTagHeaderValueFromVersion(PatientResourceVersionNumber).Tag, Common.Tools.HttpHeaderSupport.GetETagEntityTagHeaderValueFromETagString(TransactionResult.Entry[0].Response.Etag).Tag);
//Check that the FullURL of the entry is correct aginst the returned Resource
string PatientFullUrlExpected = $"{StaticTestData.FhirEndpoint()}/Patient/{PatientOneResourceId}";
Assert.AreEqual(PatientFullUrlExpected, TransactionResult.Entry[0].FullUrl);
//------------------------------------------------------------------------------------------------------
//Transaction Bundle 2 (Update) ------------------------------------------------------------------------
//------------------------------------------------------------------------------------------------------
TransBundle.Id = Guid.NewGuid().ToString();
TransBundle.Entry.Clear();
//Patient
PatientOne.Id = PatientOneResourceId;
PatientOne.Name.Clear();
string PatientFamilyName = "TestPatientUpdate";
PatientOne.Name.Add(HumanName.ForFamily(PatientFamilyName).WithGiven("TestUpdate"));
//PatientOne.BirthDateElement = new Date("1979-09-30");
//PatientOne.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, PatientOneMRNIdentifer));
//PatientOne.Gender = AdministrativeGender.Unknown;
PatientEntry = new Bundle.EntryComponent();
TransBundle.Entry.Add(PatientEntry);
PatientResourceIdFulUrl = $"{StaticTestData.FhirEndpoint()}/Patient/{PatientOneResourceId}";
PatientEntry.FullUrl = PatientResourceIdFulUrl;
PatientEntry.Resource = PatientOne;
PatientEntry.Request = new Bundle.RequestComponent();
PatientEntry.Request.Method = Bundle.HTTPVerb.PUT;
PatientEntry.Request.Url = $"Patient/{PatientOneResourceId}";
//Organization
OrganizationOne.Id = OrgOneResourceId;
OrganizationOne.Name = "Test OrganizationOne Updated";
//OrganizationOne.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, OrganizationOneMRNIdentifer));
OrganizationOneEntry = new Bundle.EntryComponent();
TransBundle.Entry.Add(OrganizationOneEntry);
OrgOneResourceIdFulUrl = $"{StaticTestData.FhirEndpoint()}/Organization/{OrgOneResourceId}";
OrganizationOneEntry.FullUrl = OrgOneResourceIdFulUrl;
OrganizationOneEntry.Resource = OrganizationOne;
OrganizationOneEntry.Request = new Bundle.RequestComponent();
OrganizationOneEntry.Request.Method = Bundle.HTTPVerb.PUT;
OrganizationOneEntry.Request.Url = $"Organization/{OrgOneResourceId}";
TransactionResult = null;
try
{
TransactionResult = clientFhir.Transaction(TransBundle);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on PUT Transaction bundle: " + Exec.Message);
}
Assert.IsTrue(TransactionResult.Entry[0].Response.Status.Contains(System.Net.HttpStatusCode.OK.ToString()));
Assert.IsTrue(TransactionResult.Entry[1].Response.Status.Contains(System.Net.HttpStatusCode.OK.ToString()));
TransactionResultPatient = TransactionResult.Entry[0].Resource as Patient;
TransactionResultOrganization = TransactionResult.Entry[1].Resource as Organization;
//Check the family name was updated in the returned resource
Assert.AreEqual(PatientFamilyName, TransactionResultPatient.Name[0].Family);
//------------------------------------------------------------------------------------------------------
//Transaction Bundle 3 (GET) ------------------------------------------------------------------------
//------------------------------------------------------------------------------------------------------
TransBundle.Id = Guid.NewGuid().ToString();
TransBundle.Entry.Clear();
PatientEntry = new Bundle.EntryComponent();
TransBundle.Entry.Add(PatientEntry);
PatientEntry.Request = new Bundle.RequestComponent();
PatientEntry.Request.Method = Bundle.HTTPVerb.GET;
PatientEntry.Request.Url = $"Patient/{TransactionResultPatient.Id}";
OrganizationOneEntry = new Bundle.EntryComponent();
TransBundle.Entry.Add(OrganizationOneEntry);
OrganizationOneEntry.Request = new Bundle.RequestComponent();
OrganizationOneEntry.Request.Method = Bundle.HTTPVerb.GET;
OrganizationOneEntry.Request.Url = $"Organization/{TransactionResultOrganization.Id}";
TransactionResult = null;
try
{
TransactionResult = clientFhir.Transaction(TransBundle);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on GET Transaction bundle" + Exec.Message);
}
Assert.IsTrue(TransactionResult.Entry[0].Response.Status.Contains(System.Net.HttpStatusCode.OK.ToString()));
Assert.IsTrue(TransactionResult.Entry[1].Response.Status.Contains(System.Net.HttpStatusCode.OK.ToString()));
TransactionResultPatient = TransactionResult.Entry[0].Resource as Patient;
TransactionResultOrganization = TransactionResult.Entry[1].Resource as Organization;
//------------------------------------------------------------------------------------------------------
//Transaction Bundle 4 Search (GET) ------------------------------------------------------------------------
//------------------------------------------------------------------------------------------------------
TransBundle.Id = Guid.NewGuid().ToString();
TransBundle.Entry.Clear();
PatientEntry = new Bundle.EntryComponent();
TransBundle.Entry.Add(PatientEntry);
PatientEntry.Request = new Bundle.RequestComponent();
PatientEntry.Request.Method = Bundle.HTTPVerb.GET;
PatientEntry.Request.Url = $"Patient?identifier={StaticTestData.TestIdentiferSystem}|{PatientOneMRNIdentifer}";
OrganizationOneEntry = new Bundle.EntryComponent();
TransBundle.Entry.Add(OrganizationOneEntry);
OrganizationOneEntry.Request = new Bundle.RequestComponent();
OrganizationOneEntry.Request.Method = Bundle.HTTPVerb.GET;
OrganizationOneEntry.Request.Url = $"Organization?identifier={StaticTestData.TestIdentiferSystem}|{OrganizationOneMRNIdentifer}";
TransactionResult = null;
try
{
TransactionResult = clientFhir.Transaction(TransBundle);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on GET Transaction bundle" + Exec.Message);
}
Assert.IsTrue(TransactionResult.Entry[0].Response.Status.Contains(System.Net.HttpStatusCode.OK.ToString()));
Assert.IsTrue(TransactionResult.Entry[1].Response.Status.Contains(System.Net.HttpStatusCode.OK.ToString()));
Bundle TransactionResultSearchPatientOneBundle = TransactionResult.Entry[0].Resource as Bundle;
Bundle TransactionResultOrganizationSearchBundle = TransactionResult.Entry[1].Resource as Bundle;
//Check we only got one back in the search bundle
Assert.AreEqual(TransactionResultSearchPatientOneBundle.Entry.Count, 1);
Assert.AreEqual(TransactionResultOrganizationSearchBundle.Entry.Count, 1);
//Check that each we got back were the two we added.
Assert.AreEqual(TransactionResultSearchPatientOneBundle.Entry[0].Resource.Id, PatientOneResourceId);
Assert.AreEqual(TransactionResultOrganizationSearchBundle.Entry[0].Resource.Id, OrgOneResourceId);
//------------------------------------------------------------------------------------------------------
//Transaction Bundle 5 If-Match (GET) --------------------------------------------------------------------
//------------------------------------------------------------------------------------------------------
TransBundle.Id = Guid.NewGuid().ToString();
TransBundle.Entry.Clear();
PatientEntry = new Bundle.EntryComponent();
TransBundle.Entry.Add(PatientEntry);
PatientEntry.Request = new Bundle.RequestComponent();
PatientEntry.Request.Method = Bundle.HTTPVerb.GET;
PatientEntry.Request.Url = $"Patient?identifier={StaticTestData.TestIdentiferSystem}|{PatientOneMRNIdentifer}";
PatientEntry.Request.IfMatch = Common.Tools.HttpHeaderSupport.GetETagString(TransactionResultSearchPatientOneBundle.Entry[0].Resource.VersionId);
OrganizationOneEntry = new Bundle.EntryComponent();
TransBundle.Entry.Add(OrganizationOneEntry);
OrganizationOneEntry.Request = new Bundle.RequestComponent();
OrganizationOneEntry.Request.Method = Bundle.HTTPVerb.GET;
OrganizationOneEntry.Request.Url = $"Organization?identifier={StaticTestData.TestIdentiferSystem}|{OrganizationOneMRNIdentifer}";
OrganizationOneEntry.Request.IfMatch = Common.Tools.HttpHeaderSupport.GetETagString(TransactionResultOrganizationSearchBundle.Entry[0].Resource.VersionId);
TransactionResult = null;
try
{
TransactionResult = clientFhir.Transaction(TransBundle);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on GET Transaction bundle" + Exec.Message);
}
Assert.IsTrue(TransactionResult.Entry[0].Response.Status.Contains(System.Net.HttpStatusCode.OK.ToString()));
Assert.IsTrue(TransactionResult.Entry[1].Response.Status.Contains(System.Net.HttpStatusCode.OK.ToString()));
TransactionResultSearchPatientOneBundle = TransactionResult.Entry[0].Resource as Bundle;
TransactionResultOrganizationSearchBundle = TransactionResult.Entry[1].Resource as Bundle;
//Check we only got one back in the search bundle
Assert.AreEqual(TransactionResultSearchPatientOneBundle.Entry.Count, 1);
Assert.AreEqual(TransactionResultOrganizationSearchBundle.Entry.Count, 1);
//------------------------------------------------------------------------------------------------------
//Transaction Bundle 6 If-Match (DELETE) --------------------------------------------------------------------
//------------------------------------------------------------------------------------------------------
TransBundle.Id = Guid.NewGuid().ToString();
TransBundle.Entry.Clear();
PatientEntry = new Bundle.EntryComponent();
TransBundle.Entry.Add(PatientEntry);
PatientEntry.Request = new Bundle.RequestComponent();
PatientEntry.Request.Method = Bundle.HTTPVerb.DELETE;
PatientEntry.Request.Url = $"Patient?identifier={StaticTestData.TestIdentiferSystem}|{PatientOneMRNIdentifer}";
PatientEntry.Request.IfMatch = Common.Tools.HttpHeaderSupport.GetETagString(TransactionResultSearchPatientOneBundle.Entry[0].Resource.VersionId);
OrganizationOneEntry = new Bundle.EntryComponent();
TransBundle.Entry.Add(OrganizationOneEntry);
OrganizationOneEntry.Request = new Bundle.RequestComponent();
OrganizationOneEntry.Request.Method = Bundle.HTTPVerb.DELETE;
OrganizationOneEntry.Request.Url = $"Organization?identifier={StaticTestData.TestIdentiferSystem}|{OrganizationOneMRNIdentifer}";
OrganizationOneEntry.Request.IfMatch = Common.Tools.HttpHeaderSupport.GetETagString(TransactionResultOrganizationSearchBundle.Entry[0].Resource.VersionId);
TransactionResult = null;
try
{
TransactionResult = clientFhir.Transaction(TransBundle);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on GET Transaction bundle" + Exec.Message);
}
Assert.IsTrue(TransactionResult.Entry[0].Response.Status.Contains(System.Net.HttpStatusCode.NoContent.ToString()));
Assert.IsTrue(TransactionResult.Entry[1].Response.Status.Contains(System.Net.HttpStatusCode.NoContent.ToString()));
CleanUpByIdentifier(ResourceType.Patient);
CleanUpByIdentifier(ResourceType.Organization);
}
public void Test_CRUD()
{
Hl7.Fhir.Rest.FhirClient clientFhir = new Hl7.Fhir.Rest.FhirClient(StaticTestData.FhirEndpoint(), false);
clientFhir.Timeout = 1000 * 720; // give the call a while to execute (particularly while debugging).
string PatientResourceId = string.Empty;
//Add a Patient resource by Update
Patient PatientOne = new Patient();
PatientOne.Name.Add(HumanName.ForFamily("TestPatient").WithGiven("Test"));
PatientOne.BirthDateElement = new Date("1979-09-30");
string PatientOneMRNIdentifer = Guid.NewGuid().ToString();
PatientOne.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, PatientOneMRNIdentifer));
PatientOne.Gender = AdministrativeGender.Unknown;
Patient PatientResult = null;
try
{
PatientResult = clientFhir.Create(PatientOne);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on resource Create: " + Exec.Message);
}
Assert.NotNull(PatientResult, "Resource create by Updated returned resource of null");
PatientResourceId = PatientResult.Id;
PatientResult = null;
//Get the Added resource by Id
try
{
//PatientOneResourceId
PatientResult = (Patient)clientFhir.Get($"{StaticTestData.FhirEndpoint()}/Patient/{PatientResourceId}");
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on resource Get: " + Exec.Message);
}
Assert.NotNull(PatientResult, "Resource Get returned resource of null");
Assert.AreEqual(PatientResourceId, PatientResult.Id, "Resource created by Updated has incorrect Resource Id");
Assert.AreEqual(AdministrativeGender.Unknown, PatientResult.Gender, "Patient gender does not match.");
//Update
PatientResult.Gender = AdministrativeGender.Male;
try
{
clientFhir.Update(PatientResult);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on resource Get: " + Exec.Message);
}
PatientResult = null;
//Get the Added resource by Id
try
{
PatientResult = (Patient)clientFhir.Get($"{StaticTestData.FhirEndpoint()}/Patient/{PatientResourceId}");
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on resource Get: " + Exec.Message);
}
Assert.NotNull(PatientResult, "Resource Get returned resource of null");
Assert.AreEqual(AdministrativeGender.Male, PatientResult.Gender, "Patient gender does not match.");
//Delete Resource
try
{
clientFhir.Delete($"Patient/{PatientResourceId}");
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on resource Get: " + Exec.Message);
}
//Get the Added resource by Id
try
{
var Result = clientFhir.Get($"{StaticTestData.FhirEndpoint()}/Patient/{PatientResourceId}");
}
catch (Hl7.Fhir.Rest.FhirOperationException OpExec)
{
Assert.AreEqual(OpExec.Status, System.Net.HttpStatusCode.Gone, "Final Get did not return Http Status of Gone.");
}
}
