public static void FlushFile(hid_t file, bool global = true)
{
var scope = global ? H5F.scope_t.GLOBAL : H5F.scope_t.LOCAL;
if (H5F.flush(file, scope) < 0)
{
throw new HDF5Exception("Failed to flush file.");
}
}
public void H5FflushTest1()
{
Assert.IsTrue(
H5F.flush(m_v0_class_file, H5F.scope_t.GLOBAL) >= 0);
Assert.IsTrue(
H5F.flush(m_v2_class_file, H5F.scope_t.GLOBAL) >= 0);
Assert.IsTrue(
H5F.flush(m_v0_class_file, H5F.scope_t.LOCAL) >= 0);
Assert.IsTrue(
H5F.flush(m_v2_class_file, H5F.scope_t.LOCAL) >= 0);
}
public override void Serialize(Epoch e, string fileTag)
{
if (!e.StartTime)
{
throw new PersistanceException("Epoch must have a start time.");
}
if (CurrentEpochGroupID == null)
{
throw new InvalidOperationException("Cannot serialize an Epoch without an open EpochGroup. Call BeginEpochGroup before attempting to serialize an Epoch.");
}
var groupName = "epoch-" + e.ProtocolID + "-" + GuidGenerator();
H5GroupId epochID = H5G.create(CurrentEpochGroupID.EpochsId, groupName); //epochGroupMetadata
log.DebugFormat("Serializing Epoch to HDF5 {0}", groupName);
WriteAttribute(epochID, "protocolID", e.ProtocolID);
// WriteEpochStart and duration
WriteAttribute(epochID, startTimeOffsetName, ((DateTimeOffset)e.StartTime).Offset.TotalHours); //TimeZone.CurrentTimeZone.GetUtcOffset(((DateTimeOffset)e.StartTime).DateTime).TotalHours);
WriteAttribute(epochID, startTimeUtcName, ((DateTimeOffset)e.StartTime).Ticks);
WriteAttribute(epochID, "durationSeconds", ((TimeSpan)e.Duration).TotalSeconds);
if (fileTag != null)
{
WriteAttribute(epochID, "fileTag", fileTag);
}
//Write keywords
WriteKeywords(epochID, e.Keywords);
// WriteBackground
Write(epochID, "background", e.Background);
// WriteProtocolParams
WriteDictionary(epochID, "protocolParameters", e.ProtocolParameters);
// WriteStimulus
WriteStimuli(epochID, "stimuli", e.Stimuli);
// WriteResponse
WriteResponses(epochID, "responses", e.Responses);
H5G.close(epochID);
H5F.flush(fileId);
}
protected override void WriteEpochGroupEnd(DateTimeOffset endTime)
{
if (CurrentEpochGroupID == null)
{
throw new InvalidOperationException("There is no open EpochGroup.");
}
var epochGroup = EpochGroupsIDs.Pop();
WriteAttribute(epochGroup.GroupId, endTimeUtcName, endTime.UtcTicks);
WriteAttribute(epochGroup.GroupId, endTimeOffsetName, endTime.Offset.TotalHours);//TimeZone.CurrentTimeZone.GetUtcOffset(endTime.DateTime).TotalHours);
H5G.close(epochGroup.SubGroupsId);
H5G.close(epochGroup.EpochsId);
H5G.close(epochGroup.GroupId);
H5F.flush(fileId);
}
protected override void OnWrite(ChannelContextGroup contextGroup, ulong fileOffset, ulong bufferOffset, ulong length)
{
long groupId = -1;
try
{
var firstChunk = (long)this.ToChunkIndex(fileOffset, contextGroup.SampleRate);
var lastChunk = (long)this.ToChunkIndex(fileOffset + length, contextGroup.SampleRate) - 1;
groupId = H5G.open(_fileId, $"/info");
_lastCompletedChunk = IOHelper.ReadDataset <double>(groupId, "last_completed_chunk").FirstOrDefault();
// this does not work in conjunction with multiple context groups
if (firstChunk <= _lastCompletedChunk)
{
// throw new Exception(ErrorMessage.Mat73Writer_ChunkAlreadyWritten);
}
// write data
for (int i = 0; i < contextGroup.ChannelContextSet.Count(); i++)
{
this.WriteData(fileOffset, bufferOffset, length, contextGroup.ChannelContextSet[i]);
}
// write last_completed_chunk
IOHelper.WriteDataset(groupId, "last_completed_chunk", new double[] { lastChunk });
}
finally
{
if (H5I.is_valid(groupId) > 0)
{
H5G.close(groupId);
}
H5F.flush(_fileId, H5F.scope_t.GLOBAL);
}
}
protected override bool OnWaitForUserInput()
{
if (this.SelectedIndex < 0)
{
this.SelectedIndex = _vdsMetaAggregateFunctionSet.Count() > 0 ? 0 : -1;
}
else if (this.SelectedIndex >= _vdsMetaAggregateFunctionSet.Count())
{
this.SelectedIndex = _vdsMetaAggregateFunctionSet.Count() - 1;
}
if (this.LastIndex >= 0)
{
Console.SetCursorPosition(1, this.LastIndex);
Console.Write(" ");
}
if (this.SelectedIndex >= 0)
{
Console.SetCursorPosition(1, this.SelectedIndex + 2);
Console.Write("x");
}
_consoleKeyInfo = Console.ReadKey(true);
switch (_consoleKeyInfo.Key)
{
case ConsoleKey.UpArrow:
if (this.SelectedIndex > 0)
{
this.LastIndex = Console.CursorTop;
this.SelectedIndex -= 1;
}
break;
case ConsoleKey.DownArrow:
if (this.SelectedIndex < _vdsMetaAggregateFunctionSet.Count() - 1)
{
this.LastIndex = Console.CursorTop;
this.SelectedIndex += 1;
}
break;
case ConsoleKey.Enter:
case ConsoleKey.RightArrow:
if (this.SelectedIndex >= 0)
{
_vdsMetaAggregateFunctionSet[this.SelectedIndex] = Program.PromptAggregateFunctionData(_vdsMetaAggregateFunctionSet[this.SelectedIndex]);
_updateAttribute = true;
}
break;
case ConsoleKey.N:
_vdsMetaAggregateFunctionSet.Add(Program.PromptAggregateFunctionData(new hdf_aggregate_function_t()));
this.SelectedIndex = _vdsMetaAggregateFunctionSet.Count();
_updateAttribute = true;
break;
case ConsoleKey.C:
if (this.SelectedIndex >= 0)
{
_vdsMetaAggregateFunctionSet.Add(_vdsMetaAggregateFunctionSet[this.SelectedIndex]);
this.SelectedIndex = _vdsMetaAggregateFunctionSet.Count();
this.OnRedraw();
}
break;
case ConsoleKey.D:
_vdsMetaAggregateFunctionSet.Add(new hdf_aggregate_function_t("mean", "none"));
_vdsMetaAggregateFunctionSet.Add(new hdf_aggregate_function_t("min", "none"));
_vdsMetaAggregateFunctionSet.Add(new hdf_aggregate_function_t("max", "none"));
_vdsMetaAggregateFunctionSet.Add(new hdf_aggregate_function_t("std", "none"));
_updateAttribute = true;
this.OnRedraw();
break;
case ConsoleKey.Delete:
if (this.SelectedIndex >= 0)
{
Console.Clear();
Console.Write("The selected item will be deleted. Proceed (Y/N)? ");
if (Console.ReadKey().Key == ConsoleKey.Y)
{
_vdsMetaAggregateFunctionSet.RemoveAt(this.SelectedIndex);
_updateAttribute = true;
}
this.OnRedraw();
}
break;
case ConsoleKey.PageUp:
if (this.SelectedIndex >= 1 && this.SelectedIndex < _vdsMetaAggregateFunctionSet.Count())
{
hdf_aggregate_function_t hdf_aggregate_function = _vdsMetaAggregateFunctionSet[this.SelectedIndex];
_vdsMetaAggregateFunctionSet.RemoveAt(this.SelectedIndex);
_vdsMetaAggregateFunctionSet.Insert(this.SelectedIndex - 1, hdf_aggregate_function);
this.SelectedIndex -= 1;
_updateAttribute = true;
}
break;
case ConsoleKey.PageDown:
if (this.SelectedIndex >= 0 && this.SelectedIndex < _vdsMetaAggregateFunctionSet.Count() - 1)
{
hdf_aggregate_function_t hdf_aggregate_function = _vdsMetaAggregateFunctionSet[this.SelectedIndex];
_vdsMetaAggregateFunctionSet.RemoveAt(this.SelectedIndex);
_vdsMetaAggregateFunctionSet.Insert(this.SelectedIndex + 1, hdf_aggregate_function);
this.SelectedIndex += 1;
_updateAttribute = true;
}
break;
case ConsoleKey.Escape:
case ConsoleKey.LeftArrow:
return(true);
}
// update attribute
if (_updateAttribute)
{
_groupId = IOHelper.OpenOrCreateGroup(_vdsMetaFileId, _currentPath).GroupId;
IOHelper.PrepareAttribute(_groupId, "aggregate_function_set", _vdsMetaAggregateFunctionSet.ToArray(), new ulong[] { (ulong)_vdsMetaAggregateFunctionSet.Count() }, true);
_updateAttribute = false;
this.OnRedraw();
}
// clean up
if (H5I.is_valid(_groupId) > 0)
{
H5F.flush(_groupId, H5F.scope_t.GLOBAL);
H5G.close(_groupId);
}
return(false);
}
protected override bool OnWaitForUserInput()
{
_totalCount = _vdsTransferFunctionSet.Count() + _vdsMetaTransferFunctionSet.Count();
if (this.SelectedIndex < 0)
{
this.SelectedIndex = _totalCount > 0 ? 0 : -1;
}
else if (this.SelectedIndex >= _totalCount)
{
this.SelectedIndex = _totalCount - 1;
}
if (this.SelectedIndex >= _vdsTransferFunctionSet.Count())
{
_offset = 3;
}
else
{
_offset = 0;
}
if (this.LastIndex >= 0)
{
Console.SetCursorPosition(1, this.LastIndex);
Console.Write(" ");
}
if (this.SelectedIndex >= 0)
{
Console.SetCursorPosition(1, this.SelectedIndex + _offset + 4);
Console.Write("x");
}
_consoleKeyInfo = Console.ReadKey(true);
switch (_consoleKeyInfo.Key)
{
case ConsoleKey.UpArrow:
if (this.SelectedIndex > 0)
{
this.LastIndex = Console.CursorTop;
this.SelectedIndex -= 1;
}
break;
case ConsoleKey.DownArrow:
if (this.SelectedIndex < _totalCount - 1)
{
this.LastIndex = Console.CursorTop;
this.SelectedIndex += 1;
}
break;
case ConsoleKey.Enter:
case ConsoleKey.RightArrow:
if (this.SelectedIndex >= _vdsTransferFunctionSet.Count())
{
int index = this.SelectedIndex - _vdsTransferFunctionSet.Count();
_vdsMetaTransferFunctionSet[index] = Program.PromptTransferFunctionData(_vdsMetaTransferFunctionSet[index]);
_updateAttribute = true;
}
break;
case ConsoleKey.N:
if ((_consoleKeyInfo.Modifiers & ConsoleModifiers.Control) != 0)
{
_vdsMetaTransferFunctionSet.Add(Program.PromptTransferFunctionData(new hdf_transfer_function_t(DateTime.MinValue.ToString("yyyy-MM-dd"), "polynomial", "permanent", string.Empty)));
}
else
{
_vdsMetaTransferFunctionSet.Add(Program.PromptTransferFunctionData(new hdf_transfer_function_t()));
}
this.SelectedIndex = _totalCount;
_updateAttribute = true;
break;
case ConsoleKey.C:
if (this.SelectedIndex >= 0)
{
if (this.SelectedIndex >= 0 && this.SelectedIndex < _vdsTransferFunctionSet.Count())
{
_vdsMetaTransferFunctionSet.Add(_vdsTransferFunctionSet[this.SelectedIndex]);
}
else
{
_vdsMetaTransferFunctionSet.Add(_vdsMetaTransferFunctionSet[this.SelectedIndex - _vdsTransferFunctionSet.Count()]);
}
_updateAttribute = true;
this.SelectedIndex = _totalCount;
this.OnRedraw();
}
break;
case ConsoleKey.U:
Console.CursorVisible = true;
Console.Clear();
Console.Write($"Enter value for unit ({ _unit }): ");
(_unit, _isEscaped) = VdsToolUtilities.ReadLine(_vdsUnitSet);
if (!_isEscaped)
{
_updateUnit = true;
}
Console.CursorVisible = false;
break;
case ConsoleKey.Delete:
if (this.SelectedIndex >= _vdsTransferFunctionSet.Count())
{
Console.Clear();
Console.Write("The selected item will be deleted. Proceed (Y/N)? ");
if (Console.ReadKey().Key == ConsoleKey.Y)
{
_vdsMetaTransferFunctionSet.RemoveAt(this.SelectedIndex - _vdsTransferFunctionSet.Count());
_updateAttribute = true;
}
else
{
this.OnRedraw();
}
}
break;
case ConsoleKey.PageUp:
if (this.SelectedIndex >= _vdsTransferFunctionSet.Count() + 1 && this.SelectedIndex < _totalCount)
{
int index = this.SelectedIndex - _vdsTransferFunctionSet.Count();
hdf_transfer_function_t hdf_transfer_function = _vdsMetaTransferFunctionSet[index];
_vdsMetaTransferFunctionSet.RemoveAt(index);
_vdsMetaTransferFunctionSet.Insert(index - 1, hdf_transfer_function);
this.SelectedIndex -= 1;
_updateAttribute = true;
}
break;
case ConsoleKey.PageDown:
if (this.SelectedIndex >= _vdsTransferFunctionSet.Count() && this.SelectedIndex < _totalCount - 1)
{
int index = this.SelectedIndex - _vdsTransferFunctionSet.Count();
hdf_transfer_function_t hdf_transfer_function = _vdsMetaTransferFunctionSet[index];
_vdsMetaTransferFunctionSet.RemoveAt(index);
_vdsMetaTransferFunctionSet.Insert(index + 1, hdf_transfer_function);
this.SelectedIndex += 1;
_updateAttribute = true;
}
break;
case ConsoleKey.Escape:
case ConsoleKey.LeftArrow:
return(true);
}
// update unit
if (_updateUnit)
{
_groupId = IOHelper.OpenOrCreateGroup(_vdsMetaFileId, _currentPath).GroupId;
IOHelper.PrepareAttribute(_groupId, "unit", new string[] { _unit }, new ulong[] { 1 }, true);
_updateUnit = false;
this.OnRedraw();
}
// update attribute
if (_updateAttribute)
{
_groupId = IOHelper.OpenOrCreateGroup(_vdsMetaFileId, _currentPath).GroupId;
IOHelper.PrepareAttribute(_groupId, "transfer_function_set", _vdsMetaTransferFunctionSet.ToArray(), new ulong[] { (ulong)_vdsMetaTransferFunctionSet.Count() }, true);
_updateAttribute = false;
this.OnRedraw();
}
// clean up
if (H5I.is_valid(_groupId) > 0)
{
H5F.flush(_groupId, H5F.scope_t.GLOBAL);
H5G.close(_groupId);
}
return(false);
}
public static long Flush(long objectId, H5F.scope_t scope)
{
return(H5F.flush(objectId, scope));
}
private void OpenFile(string filePath, DateTime startDateTime, IList <ChannelContext> channelContextSet)
{
long propertyId = -1;
long datasetId = -1;
long groupId = -1;
bool isNew;
try
{
_fileId = -1;
// open file
if (File.Exists(filePath))
{
_fileId = H5F.open(filePath, H5F.ACC_RDWR, H5P.DEFAULT);
if (_fileId < 0)
{
try
{
File.Copy(filePath, filePath + ".backup");
}
catch
{
//
}
}
}
// create file
if (_fileId < 0)
{
propertyId = H5P.create(H5P.FILE_CREATE);
H5P.set_userblock(propertyId, USERBLOCK_SIZE);
_fileId = H5F.create(filePath, H5F.ACC_TRUNC, propertyId);
}
if (_fileId < 0)
{
throw new Exception($"{ ErrorMessage.Mat73Writer_CouldNotOpenOrCreateFile } File: { filePath }.");
}
// prepare channels
foreach (ChannelContext channelContext in channelContextSet)
{
var periodInSeconds = (ulong)Math.Round(_settings.FilePeriod.TotalSeconds, MidpointRounding.AwayFromZero);
var samplesPerSecond = channelContext.ChannelDescription.SampleRate.SamplesPerSecond;
(var chunkLength, var chunkCount) = GeneralHelper.CalculateChunkParameters(periodInSeconds, samplesPerSecond);
this.PrepareChannel(_fileId, channelContext.ChannelDescription, chunkLength, chunkCount);
}
// info
groupId = this.OpenOrCreateStruct(_fileId, "/info").GroupId;
(datasetId, isNew) = this.OpenOrCreateChannel(groupId, "last_completed_chunk", 1, 1);
if (isNew)
{
IOHelper.Write(datasetId, new double[] { -1 }, DataContainerType.Dataset);
}
// text entries
_textEntrySet[2].Content = startDateTime.ToString("yyyy-MM-ddTHH-mm-ss");
this.PrepareAllTextEntries(_textEntrySet);
}
finally
{
if (H5I.is_valid(datasetId) > 0)
{
H5D.close(datasetId);
}
if (H5I.is_valid(propertyId) > 0)
{
H5P.close(propertyId);
}
if (H5I.is_valid(groupId) > 0)
{
H5G.close(groupId);
}
H5F.flush(_fileId, H5F.scope_t.GLOBAL);
// write preamble
if (H5I.is_valid(_fileId) > 0)
{
H5F.close(_fileId);
this.WritePreamble(filePath);
}
}
_fileId = H5F.open(filePath, H5F.ACC_RDWR);
}
public void HDF5Flush()
{
H5F.flush(dataSet_, H5F.scope_t.LOCAL);
}
public void H5FflushTest2()
{
Assert.IsFalse(
H5F.flush(Utilities.RandomInvalidHandle(),
H5F.scope_t.GLOBAL) >= 0);
}
public static void FlushToFile(Hdf5Identifier _fileId)
{
H5F.flush(_fileId.Value, H5F.scope_t.GLOBAL);
}
protected override bool OnWaitForUserInput()
{
_totalCount = _vdsTagSet.Count() + _vdsMetaTagSet.Count();
if (this.SelectedIndex < 0)
{
this.SelectedIndex = _totalCount > 0 ? 0 : -1;
}
else if (this.SelectedIndex >= _totalCount)
{
this.SelectedIndex = _totalCount - 1;
}
if (this.SelectedIndex >= _vdsTagSet.Count())
{
_offset = _baseOffset + 3;
}
else
{
_offset = _baseOffset + 0;
}
if (this.LastIndex >= 0)
{
Console.SetCursorPosition(1, this.LastIndex);
Console.Write(" ");
}
if (this.SelectedIndex >= 0)
{
Console.SetCursorPosition(1, this.SelectedIndex + _offset + 2);
Console.Write("x");
}
_consoleKeyInfo = Console.ReadKey(true);
switch (_consoleKeyInfo.Key)
{
case ConsoleKey.UpArrow:
if (this.SelectedIndex > 0)
{
this.LastIndex = Console.CursorTop;
this.SelectedIndex -= 1;
}
break;
case ConsoleKey.DownArrow:
if (this.SelectedIndex < _totalCount - 1)
{
this.LastIndex = Console.CursorTop;
this.SelectedIndex += 1;
}
break;
case ConsoleKey.Enter:
case ConsoleKey.RightArrow:
if (this.SelectedIndex >= _vdsTagSet.Count())
{
int index = this.SelectedIndex - _vdsTagSet.Count();
_vdsMetaTagSet[index] = Program.PromptTagData(_vdsMetaTagSet[index]);
_updateAttribute = true;
}
break;
case ConsoleKey.N:
_vdsMetaTagSet.Add(Program.PromptTagData(new hdf_tag_t()));
this.SelectedIndex = _totalCount;
_updateAttribute = true;
break;
case ConsoleKey.C:
if (this.SelectedIndex >= 0)
{
_vdsMetaTagSet.Add(_vdsMetaTagSet[this.SelectedIndex]);
this.SelectedIndex = _totalCount;
this.OnRedraw();
}
break;
case ConsoleKey.D:
Console.CursorVisible = true;
Console.Clear();
Console.Write($"\"{_description}\"\n");
Console.WriteLine();
Console.Write($"New description:\n");
_description = Console.ReadLine();
Console.CursorVisible = false;
_updateDescription = true;
break;
case ConsoleKey.Delete:
if (this.SelectedIndex >= _vdsTagSet.Count())
{
Console.Clear();
Console.Write("The selected item will be deleted. Proceed (Y/N)? ");
if (Console.ReadKey().Key == ConsoleKey.Y)
{
_vdsMetaTagSet.RemoveAt(this.SelectedIndex - _vdsTagSet.Count());
_updateAttribute = true;
}
this.OnRedraw();
break;
}
break;
case ConsoleKey.PageUp:
if (this.SelectedIndex >= _vdsTagSet.Count() + 1 && this.SelectedIndex < _totalCount)
{
int index = this.SelectedIndex - _vdsTagSet.Count();
hdf_tag_t hdf_tag = _vdsMetaTagSet[index];
_vdsMetaTagSet.RemoveAt(index);
_vdsMetaTagSet.Insert(index - 1, hdf_tag);
this.SelectedIndex -= 1;
_updateAttribute = true;
}
break;
case ConsoleKey.PageDown:
if (this.SelectedIndex >= _vdsTagSet.Count() && this.SelectedIndex < _totalCount - 1)
{
int index = this.SelectedIndex - _vdsTagSet.Count();
hdf_tag_t hdf_tag = _vdsMetaTagSet[index];
_vdsMetaTagSet.RemoveAt(index);
_vdsMetaTagSet.Insert(index + 1, hdf_tag);
this.SelectedIndex += 1;
_updateAttribute = true;
}
break;
case ConsoleKey.Escape:
case ConsoleKey.LeftArrow:
return(true);
}
// update description
if (_updateDescription)
{
_groupId = IOHelper.OpenOrCreateGroup(_vdsMetaFileId, _currentPath).GroupId;
IOHelper.PrepareAttribute(_groupId, "description", new string[] { _description }, new ulong[] { 1 }, true);
_updateDescription = false;
this.OnRedraw();
}
// update attribute
if (_updateAttribute)
{
_groupId = IOHelper.OpenOrCreateGroup(_vdsMetaFileId, _currentPath).GroupId;
IOHelper.PrepareAttribute(_groupId, "tag_set", _vdsMetaTagSet.ToArray(), new ulong[] { (ulong)_vdsMetaTagSet.Count() }, true);
_updateAttribute = false;
this.OnRedraw();
}
// clean up
if (H5I.is_valid(_groupId) > 0)
{
H5F.flush(_groupId, H5F.scope_t.GLOBAL);
H5G.close(_groupId);
}
return(false);
}
/**
* Opens access to this file.
*
* @param loadFullHierarchy
* if true, load the full hierarchy into memory; otherwise just opens the file identifier.
*
* @return the file identifier if successful; otherwise returns negative value.
*
* @throws Exception
* If there is a failure.
*/
private long open(bool loadFullHierarchy, long plist)
{
Hdf5Utils.LogInfo?.Invoke($"open(loadFullHierarchy = {loadFullHierarchy}, plist = {plist}): start");
if (fid > 0)
{
Hdf5Utils.LogInfo?.Invoke("open(): FID already opened");
Hdf5Utils.LogInfo?.Invoke("open(): finish");
return(fid); // file is opened already
}
// The cwd may be changed at Dataset.read() by System.setProperty("user.dir", newdir)
// to make it work for external datasets. We need to set it back
// before the file is closed/opened.
string rootPath = Environment.CurrentDirectory;
if (!File.Exists(fullFileName))
{
Hdf5Utils.LogInfo?.Invoke($"open(): File {fullFileName} does not exist");
Hdf5Utils.LogInfo?.Invoke("open(): finish");
throw new Exception("File does not exist -- " + fullFileName);
}
else if ((flag == HDF5Constants.H5F_ACC_RDONLY) && new FileInfo(fullFileName).IsReadOnly)
{
Hdf5Utils.LogInfo?.Invoke($"open(): Cannot read file {fullFileName}");
Hdf5Utils.LogInfo?.Invoke("open(): finish");
throw new Exception("Cannot read file -- " + fullFileName);
}
// check for valid file access permission
else if (flag < 0)
{
Hdf5Utils.LogInfo?.Invoke("open(): Invalid access identifier -- " + flag);
Hdf5Utils.LogInfo?.Invoke("open(): finish");
throw new Exception("Invalid access identifer -- " + flag);
}
else if (HDF5Constants.H5F_ACC_CREAT == flag)
{
// create a new file
Hdf5Utils.LogInfo?.Invoke("open(): create file");
fid = H5F.create(fullFileName, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT);
H5F.flush(fid, HDF5Constants.H5F_SCOPE_LOCAL);
H5F.close(fid);
flag = HDF5Constants.H5F_ACC_RDWR;
}
else if (((flag == HDF5Constants.H5F_ACC_RDWR) || (flag == HDF5Constants.H5F_ACC_CREAT)) && new FileInfo(fullFileName).IsReadOnly)
{
Hdf5Utils.LogInfo?.Invoke($"open(): Cannot write file {fullFileName}");
Hdf5Utils.LogInfo?.Invoke("open(): finish");
throw new Exception("Cannot write file, try opening as read-only -- " + fullFileName);
}
try
{
Hdf5Utils.LogInfo?.Invoke("open(): open file");
fid = H5F.open(fullFileName, flag, plist);
}
catch (Exception ex)
{
try
{
Hdf5Utils.LogInfo?.Invoke("open(): open failed, attempting to open file read-only");
fid = H5F.open(fullFileName, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
isReadOnly = true;
}
catch (Exception ex2)
{
Hdf5Utils.LogError?.Invoke("open(): open failed:" + ex2);
}
}
if ((fid >= 0) && loadFullHierarchy)
{
// load the hierarchy of the file
Hdf5Utils.LogInfo?.Invoke("open(loadFullHeirarchy): load the hierarchy");
loadIntoMemory();
}
Hdf5Utils.LogInfo?.Invoke($"open(loadFullHeirarchy = {loadFullHierarchy}, plist = {plist}): finish");
return(fid);
}
