public void TestGenBankForManyFiles()
{
// parser and formatter will be used for all files in input dir
// iterate through the files in input dir, parsing and formatting each; write results
// to log file
DirectoryInfo inputDirInfo = new DirectoryInfo(_genBankDataPath);
foreach (FileInfo fileInfo in inputDirInfo.GetFiles("*.gbk"))
{
ApplicationLog.WriteLine("Parsing file {0}...{1}", fileInfo.FullName, Environment.NewLine);
IEnumerable <ISequence> seqList = new GenBankParser().Parse(fileInfo.FullName);
ISequenceFormatter formatter = new GenBankFormatter();
using (formatter.Open(TempGenBankFileName))
{
(formatter as GenBankFormatter).Format(seqList.ToList());
}
using (var reader = new StreamReader(TempGenBankFileName))
{
string actual = reader.ReadToEnd();
}
File.Delete(TempGenBankFileName);
}
}
