public void ProcessData(IMatrixData inData, INetworkData outData, Parameters param, ref IData[] supplData, ProcessInfo processInfo)
{
var remoteExe = param.GetParam <string>(InterpreterLabel).Value;
var inFile = Path.GetTempFileName();
PerseusUtils.WriteMatrixToFile(inData, inFile, false);
var paramFile = Path.GetTempFileName();
param.ToFile(paramFile);
var outFolder = Path.Combine(Path.GetTempPath(), Path.GetRandomFileName());
if (!TryGetCodeFile(param, out string codeFile))
{
processInfo.ErrString = $"Code file '{codeFile}' was not found";
return;
}
var suppFiles = SupplDataTypes.Select(Utils.CreateTemporaryPath).ToArray();
var args = $"{codeFile} {paramFile} {inFile} {outFolder} {string.Join(" ", suppFiles)}";
Debug.WriteLine($"executing > {remoteExe} {args}");
if (Utils.RunProcess(remoteExe, args, processInfo.Status, out string processInfoErrString) != 0)
{
processInfo.ErrString = processInfoErrString;
return;
}
;
FolderFormat.Read(outData, outFolder, processInfo);
supplData = Utils.ReadSupplementaryData(suppFiles, SupplDataTypes, processInfo);
}
/// <summary>
/// Read supplementary files according to file paths and data types.
/// </summary>
/// <param name="suppFiles"></param>
/// <param name="supplDataTypes"></param>
/// <param name="processInfo"></param>
/// <returns></returns>
/// <exception cref="NotImplementedException"></exception>
public static IData[] ReadSupplementaryData(string[] suppFiles, DataType[] supplDataTypes, ProcessInfo processInfo)
{
var numSupplTables = suppFiles.Length;
IData[] supplData = new IData[numSupplTables];
for (int i = 0; i < numSupplTables; i++)
{
switch (supplDataTypes[i])
{
case DataType.Matrix:
var mdata = PerseusFactory.CreateMatrixData();
PerseusUtils.ReadMatrixFromFile(mdata, processInfo, suppFiles[i], '\t');
supplData[i] = mdata;
break;
case DataType.Network:
var ndata = PerseusFactory.CreateNetworkData();
FolderFormat.Read(ndata, suppFiles[i], processInfo);
supplData[i] = ndata;
break;
default:
throw new NotImplementedException($"Data type {supplDataTypes[i]} not supported!");
}
}
return(supplData);
}
public void LoadData(INetworkDataAnnColumns ndata, Parameters param, ref IData[] supplData, ProcessInfo processInfo)
{
var remoteExe = GetExectuable(param);
if (string.IsNullOrWhiteSpace(remoteExe))
{
processInfo.ErrString = Resources.RemoteExeNotSpecified;
}
var outFolder = Path.Combine(Path.GetTempPath(), Path.GetRandomFileName());
if (!TryGetCodeFile(param, out string codeFile))
{
processInfo.ErrString = $"Code file '{codeFile}' was not found";
return;
}
var suppFiles = SupplDataTypes.Select(Utils.CreateTemporaryPath).ToArray();
var commandLineArguments = GetCommandLineArguments(param);
var args = $"{codeFile} {commandLineArguments} {outFolder} {string.Join(" ", suppFiles)}";
Debug.WriteLine($"executing > {remoteExe} {args}");
if (Utils.RunProcess(remoteExe, args, processInfo.Status, out string processInfoErrString) != 0)
{
processInfo.ErrString = processInfoErrString;
return;
}
FolderFormat.Read(ndata, outFolder, processInfo);
supplData = Utils.ReadSupplementaryData(suppFiles, SupplDataTypes, processInfo);
}
public static ButtonParamWf DataPreviewButton(INetworkData ndata)
{
return(new ButtonParamWf("Download data for preview", "save", (o, args) =>
{
var dialog = new FolderBrowserDialog
{
ShowNewFolderButton = true
};
if (dialog.ShowDialog() == DialogResult.OK)
{
FolderFormat.Write(ndata, dialog.SelectedPath);
}
}));
}
