static void Main(string[] args)
{
FlashLFQEngine engine = new FlashLFQEngine();
engine.globalStopwatch.Start();
if (!engine.ReadPeriodicTable(null))
{
return;
}
if (!engine.ParseArgs(args))
{
return;
}
if (!engine.ReadIdentificationsFromTSV())
{
return;
}
engine.ConstructIndexTemplateFromIdentifications();
Parallel.For(0, engine.filePaths.Length,
new ParallelOptions {
MaxDegreeOfParallelism = 1
},
fileNumber =>
{
if (!engine.Quantify(null, engine.filePaths[fileNumber]) && !engine.silent)
{
Console.WriteLine("Error quantifying file " + engine.filePaths[fileNumber]);
}
GC.Collect();
}
);
if (engine.mbr)
{
engine.RetentionTimeCalibrationAndErrorCheckMatchedFeatures();
}
if (!engine.WriteResults("_FlashLFQ_", true, true, true))
{
return;
}
if (!engine.silent)
{
Console.WriteLine("All done");
}
if (!engine.silent)
{
Console.WriteLine("Analysis time: " + engine.globalStopwatch.Elapsed.Hours + "h " + engine.globalStopwatch.Elapsed.Minutes + "m " +
engine.globalStopwatch.Elapsed.Seconds + "s");
}
if (engine.pause)
{
Console.ReadKey();
}
}