public TextMiningEngine(PhenotypeEngine phenotypeEngine)
{
Console.WriteLine("TextMiningEngine initialization ...");
stringBuilder = new System.Text.StringBuilder();
client = new HttpClient();
symptomsList = phenotypeEngine.SymptomsList;
//////////////////
//symptomsList = new List<Symptom>();
//GetSymptomsList();
///////////////
//getSymptomsListBeta();
//Preparing dictionary
//Construct dictionnary for symptoms
TrieDictionary dict = new TrieDictionary();
foreach (Symptom pheno in symptomsList)
{
dict.addEntry(new com.aliasi.dict.DictionaryEntry(pheno.Name, "PHENOTYPE"));
foreach (string synonym in pheno.Synonyms)
{
dict.addEntry(new com.aliasi.dict.DictionaryEntry(synonym, "PHENOTYPE"));
}
}
TokenizerFactory tokenizerFactory = IndoEuropeanTokenizerFactory.INSTANCE;
WeightedEditDistance editDistance = new FixedWeightEditDistance(0, -1, -1, -1, System.Double.NaN);
double maxDistance = 0.0;
chunker = new ApproxDictionaryChunker(dict, tokenizerFactory, editDistance, maxDistance);
/*
* //////////////////////////////////////////
* //FOR HMM PREPARATION
* string pathWithoutSettings = Environment.GetEnvironmentVariable("RD_AGGREGATOR_SETTINGS").Substring(0, Environment.GetEnvironmentVariable("RD_AGGREGATOR_SETTINGS").Length - 14);
* string completePath = $"{pathWithoutSettings}\\Aggregator\\tools\\model.test";
* Console.WriteLine(completePath);
* java.io.File modelFile = new java.io.File(completePath);
* //chunkerHMM = Conversion.Converter.Convert($"{pathWithoutSettings}\\Aggregator\\tools\\model.test");
* //java.io.File modelFile = new java.io.File(@"C: \Users\CharlesCOUSYN\Desktop\qhskdjhq.txt");
* chunkerHMM = (Chunker)AbstractExternalizable.readObject(modelFile);
*
* //////////////////////////////////////////
*/
Console.WriteLine("TextMiningEngine initialization finished");
}
public TextMiningEngine()
{
Console.WriteLine("TextMiningEngine initialization ...");
client = new HttpClient();
symptomsList = new List <Symptom>();
GetSymptomsList();
//getSymptomsListBeta();
//Preparing dictionary
//Construct dictionnary for symptoms
TrieDictionary dict = new TrieDictionary();
foreach (Symptom pheno in symptomsList)
{
dict.addEntry(new com.aliasi.dict.DictionaryEntry(pheno.Name, "PHENOTYPE"));
foreach (string synonym in pheno.Synonyms)
{
dict.addEntry(new com.aliasi.dict.DictionaryEntry(synonym, "PHENOTYPE"));
}
}
TokenizerFactory tokenizerFactory = IndoEuropeanTokenizerFactory.INSTANCE;
WeightedEditDistance editDistance = new FixedWeightEditDistance(0, -1, -1, -1, System.Double.NaN);
double maxDistance = 0.0;
chunker = new ApproxDictionaryChunker(dict, tokenizerFactory, editDistance, maxDistance);
//////////////////////////////////////////
//FOR HMM PREPARATION
java.io.File modelFile = new java.io.File($"{Environment.GetEnvironmentVariable("RD_AGGREGATOR_SETTINGS")}/Aggregator/tools/model.test");
chunkerHMM = (Chunker)AbstractExternalizable.readObject(modelFile);
//////////////////////////////////////////
Console.WriteLine("TextMiningEngine initialization finished");
}
