public void TestSuiteCreation(DatabaseType dbType)
{
var db = GetCleanedServer(dbType);
var template = Path.Combine(TestContext.CurrentContext.WorkDirectory, "CT.it");
File.WriteAllText(template, TemplateYaml);
var cmd = new ExecuteCommandCreateNewImagingDatasetSuite(RepositoryLocator, db,
new DirectoryInfo(TestContext.CurrentContext.WorkDirectory),
typeof(DicomFileCollectionSource),
"CT_",
new FileInfo(template),
persistentRaw: false,
createLoad: true);
Assert.IsFalse(cmd.IsImpossible);
cmd.Execute();
Assert.IsNotNull(cmd.NewLoadMetadata);
var pipelineCreated = RepositoryLocator.CatalogueRepository.GetAllObjects <Pipeline>().OrderByDescending(p => p.ID).First();
Assert.AreEqual(typeof(DicomFileCollectionSource), pipelineCreated.Source.GetClassAsSystemType());
var argFieldMap = pipelineCreated.Source.GetAllArguments().Single(a => a.Name.Equals(nameof(DicomSource.UseAllTableInfoInLoadAsFieldMap)));
Assert.IsNotNull(argFieldMap);
Assert.AreEqual(argFieldMap.GetValueAsSystemType(), cmd.NewLoadMetadata);
}
private void CreateSuite(ImageTableTemplateCollection template)
{
var db = serverDatabaseTableSelector1.GetDiscoveredDatabase();
if (!CreateDatabaseIfNotExists(db))
{
return;
}
DirectoryInfo dir = null;
using (FolderBrowserDialog dialog = new FolderBrowserDialog
{
Description = "Select Project Directory (For Sql scripts/Executables etc)"
})
{
//if we are creating a load we need to know where to store load scripts etc
if (cbCreateLoad.Checked)
{
if (dialog.ShowDialog() == DialogResult.OK)
{
dir = new DirectoryInfo(dialog.SelectedPath);
}
else
{
return;
}
}
}
var cmd = new ExecuteCommandCreateNewImagingDatasetSuite(_activator.RepositoryLocator, db, dir)
{
DicomSourceType = rbJsonSources.Checked
? typeof(DicomDatasetCollectionSource)
: typeof(DicomFileCollectionSource),
CreateCoalescer = cbMergeNullability.Checked,
CreateLoad = cbCreateLoad.Checked,
TablePrefix = tbPrefix.Text,
Template = template
};
cmd.Execute();
var firstCata = cmd.NewCataloguesCreated.First();
if (firstCata != null)
{
_activator.Publish(firstCata);
}
MessageBox.Show("Create Suite Completed");
}
public void SetupSuite(DiscoveredDatabase databaseToCreateInto, IRDMPPlatformRepositoryServiceLocator repositoryLocator, GlobalOptions globalOptions, Type pipelineDicomSourceType, string root = null, ImageTableTemplateCollection template = null, bool persistentRaw = false, string modalityPrefix = null)
{
ImageTable = databaseToCreateInto.ExpectTable(modalityPrefix + "ImageTable");
SeriesTable = databaseToCreateInto.ExpectTable(modalityPrefix + "SeriesTable");
StudyTable = databaseToCreateInto.ExpectTable(modalityPrefix + "StudyTable");
try
{
File.Copy(typeof(InvalidDataHandling).Assembly.Location, Path.Combine(TestContext.CurrentContext.TestDirectory, "Rdmp.Dicom.dll"), true);
}
catch (System.IO.IOException)
{
//nevermind, it's probably locked
}
//The Rdmp.Dicom assembly should be loaded as a plugin, this simulates it.
foreach (var type in typeof(InvalidDataHandling).Assembly.GetTypes())
{
repositoryLocator.CatalogueRepository.MEF.AddTypeToCatalogForTesting(type);
}
ICatalogueRepository catalogueRepository = repositoryLocator.CatalogueRepository;
IDataExportRepository dataExportRepository = repositoryLocator.DataExportRepository;
foreach (var t in new[] { ImageTable, SeriesTable, StudyTable })
{
if (t.Exists())
{
t.Drop();
}
}
var suite = new ExecuteCommandCreateNewImagingDatasetSuite(repositoryLocator, databaseToCreateInto, new DirectoryInfo(TestContext.CurrentContext.TestDirectory));
suite.Template = template ?? GetDefaultTemplate(databaseToCreateInto.Server.DatabaseType);
suite.PersistentRaw = persistentRaw;
suite.TablePrefix = modalityPrefix;
suite.DicomSourceType = pipelineDicomSourceType;
suite.CreateCoalescer = true;
suite.Execute();
DicomSourcePipelineComponent = suite.DicomSourcePipelineComponent; //store the component created so we can inject/adjust the arguments e.g. adding ElevationRequests to it
LoadMetadata = suite.NewLoadMetadata;
var tableInfos = LoadMetadata.GetAllCatalogues().SelectMany(c => c.GetTableInfoList(false)).Distinct().ToArray();
ImageTableInfo = (TableInfo)tableInfos.Single(t => t.GetRuntimeName().Equals(ImageTable.GetRuntimeName()));
SeriesTableInfo = (TableInfo)tableInfos.Single(t => t.GetRuntimeName().Equals(SeriesTable.GetRuntimeName()));
StudyTableInfo = (TableInfo)tableInfos.Single(t => t.GetRuntimeName().Equals(StudyTable.GetRuntimeName()));
// Override the options with stuff coming from Core RDMP DatabaseTests (TestDatabases.txt)
globalOptions.FileSystemOptions.FileSystemRoot = root ?? TestContext.CurrentContext.TestDirectory;
globalOptions.RDMPOptions.CatalogueConnectionString = ((TableRepository)catalogueRepository).DiscoveredServer.Builder.ConnectionString;
globalOptions.RDMPOptions.DataExportConnectionString = ((TableRepository)dataExportRepository).DiscoveredServer.Builder.ConnectionString;
globalOptions.DicomRelationalMapperOptions.LoadMetadataId = LoadMetadata.ID;
globalOptions.DicomRelationalMapperOptions.MinimumBatchSize = 1;
globalOptions.DicomRelationalMapperOptions.UseInsertIntoForRAWMigration = true;
//Image table now needs all the UIDs in order to be extractable
var adder = new TagColumnAdder("StudyInstanceUID", "varchar(100)", ImageTableInfo, new AcceptAllCheckNotifier());
adder.Execute();
}