public IActionResult SaveEmr([FromBody] EmrSystem entity)
{
if (null == entity)
{
return(BadRequest());
}
if (entity.Id.IsNullOrEmpty())
{
entity.Id = LiveGuid.NewGuid();
}
try
{
_emrManagerService.SaveEmr(entity);
return(Ok(entity));
}
catch (Exception e)
{
var msg = $"Error saving {nameof(EmrSystem)}";
Log.Error(msg);
Log.Error($"{e}");
return(StatusCode(500, msg));
}
}
public static void InitDb()
{
var settingsContext = ServiceProvider.GetService <SettingsContext>();
var extractsContext = ServiceProvider.GetService <ExtractsContext>();
settingsContext.Database.Migrate();
settingsContext.EnsureSeeded();
extractsContext.Database.Migrate();
extractsContext.EnsureSeeded();
Iqtools = settingsContext.EmrSystems
.Include(x => x.DatabaseProtocols)
.Include(x => x.Extracts)
.First(x => x.Id == new Guid("a62216ee-0e85-11e8-ba89-0ed5f89f718b"));
Validator = extractsContext.Validator.First();
var dbmanager = ServiceProvider.GetService <IAppDatabaseManager>();
IqToolsDatabase = dbmanager.ReadConnection(settingsContext.Database.GetDbConnection().ConnectionString,
DatabaseProvider.MsSql);
IQtoolsDbProtocol =
Iqtools.DatabaseProtocols.First(x => x.DatabaseName.ToLower().Contains("iqtools".ToLower()));
IQtoolsDbProtocol.Host = IqToolsDatabase.Server;
IQtoolsDbProtocol.Username = IqToolsDatabase.User;
IQtoolsDbProtocol.Password = IqToolsDatabase.Password;
}
public static void InitMysQLDb()
{
var settingsContextMysql = ServiceProviderMysql.GetService <SettingsContext>();
var extractsContextMysql = ServiceProviderMysql.GetService <ExtractsContext>();
settingsContextMysql.Database.Migrate();
settingsContextMysql.EnsureSeeded();
extractsContextMysql.Database.Migrate();
extractsContextMysql.EnsureSeeded();
KenyaEmr = settingsContextMysql.EmrSystems
.Include(x => x.DatabaseProtocols)
.Include(x => x.Extracts)
.First(x => x.Id == new Guid("a6221856-0e85-11e8-ba89-0ed5f89f718b"));
Validator = extractsContextMysql.Validator.First();
var dbmanager = ServiceProvider.GetService <IAppDatabaseManager>();
KenyaEmrDatabase = dbmanager.ReadConnection(settingsContextMysql.Database.GetDbConnection().ConnectionString, DatabaseProvider.MySql);
KenyaEmrDbProtocol = KenyaEmr.DatabaseProtocols.First();
KenyaEmrDbProtocol.Host = KenyaEmrDatabase.Server;
KenyaEmrDbProtocol.Username = KenyaEmrDatabase.User;
KenyaEmrDbProtocol.Password = KenyaEmrDatabase.Password;
}
public void Init()
{
_options = TestDbOptions.GetInMemoryOptions <SettingsContext>();
var context = new SettingsContext(_options);
context.Database.EnsureDeleted();
context.Database.EnsureCreated();
_iqcareEmr = new EmrSystem("IQCare", "v1");
_iqcareEmr.AddProtocol(new DatabaseProtocol(DatabaseType.MicrosoftSQL, @".\koske14", "sa", "maun", "iqcare"));
_iqcareEmr.AddRestProtocol(new RestProtocol("http://192.168.1.10/api", "xys"));
context.Add(_iqcareEmr);
context.SaveChanges();
}
public static void InitDbMySql()
{
var settingsContext = ServiceProviderMysql.GetService <SettingsContext>();
var dbmanager = ServiceProviderMysql.GetService <IAppDatabaseManager>();
KenyaEmr = settingsContext.EmrSystems.Include(x => x.DatabaseProtocols).FirstOrDefault(x => x.Name == "KenyaEMR");
KenyaEmrDatabase = dbmanager.ReadConnection(settingsContext.Database.GetDbConnection().ConnectionString,
DatabaseProvider.MySql);
KenyaEmrDbProtocol = KenyaEmr.DatabaseProtocols.First();
KenyaEmrDbProtocol.Host = KenyaEmrDatabase.Server;
KenyaEmrDbProtocol.Username = KenyaEmrDatabase.User;
KenyaEmrDbProtocol.Password = KenyaEmrDatabase.Password;
}
public void should_Post_Emr()
{
var emr = new EmrSystem("Test", "v3");
var response = _emrManagerController.SaveEmr(emr);
var result = response as OkObjectResult;
Assert.IsNotNull(result);
Assert.AreEqual(200, result.StatusCode);
var emrSystem = _emrSystemRepository.Get(emr.Id);
Assert.NotNull(emrSystem);
Console.WriteLine(emrSystem);
}
public static void InitDbMsSql()
{
var settingsContext = ServiceProvider.GetService <SettingsContext>();
var dbmanager = ServiceProvider.GetService <IAppDatabaseManager>();
Iqtools = settingsContext.EmrSystems.Include(x => x.DatabaseProtocols).FirstOrDefault(x => x.Name == "IQCare");
IqToolsDatabase = dbmanager.ReadConnection(settingsContext.Database.GetDbConnection().ConnectionString,
DatabaseProvider.MsSql);
IQtoolsDbProtocol =
Iqtools.DatabaseProtocols.First(x => x.DatabaseName.ToLower().Contains("iqtools".ToLower()));
IQtoolsDbProtocol.Host = IqToolsDatabase.Server;
IQtoolsDbProtocol.Username = IqToolsDatabase.User;
IQtoolsDbProtocol.Password = IqToolsDatabase.Password;
}
public void Init()
{
_options = TestDbOptions.GetInMemoryOptions <SettingsContext>();
var context = new SettingsContext(_options);
context.Database.EnsureDeleted();
context.Database.EnsureCreated();
_iqcareEmr = new EmrSystem("IQCare", "v1");
_iqcareEmr.AddProtocol(new DatabaseProtocol(DatabaseType.MicrosoftSQL, @".\koske14", "sa", "maun", "iqcare"));
_kenyaEmr = new EmrSystem("KenyaEMR", "v1");
_kenyaEmr.AddProtocol(new DatabaseProtocol(DatabaseType.MySQL, @"localhost", "root", "root", "openmrs"));
_otherEmr = new EmrSystem("xEmr", "1");
_otherEmr.AddProtocol(new DatabaseProtocol(DatabaseType.MySQL, @"localhost", "root", "root", "otheropenmrs"));
context.AddRange(new List <EmrSystem> {
_iqcareEmr, _kenyaEmr, _otherEmr
});
context.SaveChanges();
}
public IActionResult SetDefault([FromBody] EmrSystem emrSystem)
{
try
{
if (emrSystem == null)
{
return(BadRequest());
}
_emrManagerService.SetDefault(emrSystem.Id);
return(Ok(true));
}
catch (Exception ex)
{
var msg = $"Error setting Emr {emrSystem.Name} as default";
Log.Error(msg);
Log.Error($"{ex}");
return(StatusCode(500, msg));
}
}
public async Task <IActionResult> LoadMetric([FromBody] EmrSystem entity)
{
if (null == entity)
{
return(BadRequest());
}
var restProtocol = entity.RestProtocols.FirstOrDefault();
if (null == restProtocol)
{
return(BadRequest());
}
if (null == restProtocol.Metric)
{
return(BadRequest());
}
try
{
var metric = await _metricsService.Read(restProtocol, restProtocol.Metric.EndPoint);
if (null == metric)
{
throw new Exception("could not load EMR metrics");
}
return(Ok(metric));
}
catch (Exception e)
{
var msg = $"Error loading {nameof(EmrMetric)}";
Log.Error(msg);
Log.Error($"{e}");
return(StatusCode(500, msg));
}
}
public void Setup()
{
var config = new ConfigurationBuilder()
.AddJsonFile("appsettings.json")
.Build();
var mysqlConfig = new ConfigurationBuilder()
.AddJsonFile("appsettings.mysql.json")
.Build();
var serviceProvider = new ServiceCollection()
.AddDbContext <ExtractsContext>(x => x.UseSqlServer(config["ConnectionStrings:DwapiConnection"]))
.AddDbContext <SettingsContext>(x => x.UseSqlServer(config["ConnectionStrings:DwapiConnection"]))
.AddTransient <IExtractHistoryRepository, ExtractHistoryRepository>()
.AddTransient <ITempMasterPatientIndexRepository, TempMasterPatientIndexRepository>()
.AddTransient <IMasterPatientIndexRepository, MasterPatientIndexRepository>()
.AddTransient <ITempPatientExtractRepository, TempPatientExtractRepository>()
.AddTransient <ICleanCbsExtracts, CleanCbsExtracts>()
.AddTransient <IClearDwhExtracts, ClearDwhExtracts>()
.AddTransient <IMasterPatientIndexReader, MasterPatientIndexReader>()
.AddTransient <IExtractSourceReader, ExtractSourceReader>()
.AddTransient <IAppDatabaseManager, AppDatabaseManager>()
.BuildServiceProvider();
var serviceProviderMysql = new ServiceCollection()
.AddDbContext <ExtractsContext>(x => x.UseMySql(mysqlConfig["ConnectionStrings:DwapiConnection"]))
.AddDbContext <SettingsContext>(x => x.UseMySql(mysqlConfig["ConnectionStrings:DwapiConnection"]))
.AddTransient <IExtractHistoryRepository, ExtractHistoryRepository>()
.AddTransient <ITempMasterPatientIndexRepository, TempMasterPatientIndexRepository>()
.AddTransient <IMasterPatientIndexRepository, MasterPatientIndexRepository>()
.AddTransient <ITempPatientExtractRepository, TempPatientExtractRepository>()
.AddTransient <ICleanCbsExtracts, CleanCbsExtracts>()
.AddTransient <IClearDwhExtracts, ClearDwhExtracts>()
.AddTransient <IMasterPatientIndexReader, MasterPatientIndexReader>()
.AddTransient <IExtractSourceReader, ExtractSourceReader>()
.AddTransient <IAppDatabaseManager, AppDatabaseManager>()
.BuildServiceProvider();
ServiceProvider = serviceProvider;
ServiceProviderMysql = serviceProviderMysql;
var settingsContext = serviceProvider.GetService <SettingsContext>();
var settingsContextMysql = serviceProviderMysql.GetService <SettingsContext>();
var extractsContext = serviceProvider.GetService <ExtractsContext>();
var extractsContextMysql = serviceProviderMysql.GetService <ExtractsContext>();
settingsContext.Database.Migrate();
settingsContext.EnsureSeeded();
settingsContextMysql.Database.Migrate();
settingsContextMysql.EnsureSeeded();
extractsContext.Database.Migrate();
extractsContext.EnsureSeeded();
extractsContextMysql.Database.Migrate();
extractsContextMysql.EnsureSeeded();
Iqtools = settingsContextMysql.EmrSystems
.Include(x => x.DatabaseProtocols)
.Include(x => x.Extracts)
.First(x => x.Id == new Guid("a62216ee-0e85-11e8-ba89-0ed5f89f718b"));
KenyaEmr = settingsContextMysql.EmrSystems
.Include(x => x.DatabaseProtocols)
.Include(x => x.Extracts)
.First(x => x.Id == new Guid("a6221856-0e85-11e8-ba89-0ed5f89f718b"));
Validator = extractsContext.Validator.First();
var dbmanager = serviceProvider.GetService <IAppDatabaseManager>();
IqToolsDatabase = dbmanager.ReadConnection(settingsContext.Database.GetDbConnection().ConnectionString, DatabaseProvider.MsSql);
KenyaEmrDatabase = dbmanager.ReadConnection(settingsContext.Database.GetDbConnection().ConnectionString, DatabaseProvider.MySql);
IQtoolsDbProtocol = Iqtools.DatabaseProtocols.First(x => x.DatabaseName.ToLower().Contains("iqtools".ToLower()));
IQtoolsDbProtocol.Host = IqToolsDatabase.Server;
IQtoolsDbProtocol.Username = IqToolsDatabase.User;
IQtoolsDbProtocol.Password = IqToolsDatabase.Password;
//_iQtoolsDb.Password = TestInitializer.IqToolsDatabase.Database;
KenyaEmrDbProtocol = KenyaEmr.DatabaseProtocols.First();
KenyaEmrDbProtocol.Host = KenyaEmrDatabase.Server;
KenyaEmrDbProtocol.Username = KenyaEmrDatabase.User;
KenyaEmrDbProtocol.Password = KenyaEmrDatabase.Password;
KenyaEmrDbProtocol.DatabaseName = KenyaEmrDatabase.Database;
}
public void Setup()
{
// return;
RegisterLicence();
var config = new ConfigurationBuilder()
.AddJsonFile("appsettings.json")
.Build();
var mysqlConfig = new ConfigurationBuilder()
.AddJsonFile("appsettings.mysql.json")
.Build();
var serviceProvider = new ServiceCollection()
.AddDbContext <ExtractsContext>(x => x.UseSqlServer(config["ConnectionStrings:DwapiConnection"]))
.AddDbContext <SettingsContext>(x => x.UseSqlServer(config["ConnectionStrings:DwapiConnection"]))
.AddTransient <IExtractHistoryRepository, ExtractHistoryRepository>()
.AddTransient <IValidatorRepository, ValidatorRepository>()
.AddTransient <ITempMasterPatientIndexRepository, TempMasterPatientIndexRepository>()
.AddTransient <IMasterPatientIndexRepository, MasterPatientIndexRepository>()
.AddTransient <ITempPatientExtractRepository, TempPatientExtractRepository>()
.AddTransient <ITempPatientArtExtractRepository, TempPatientArtExtractRepository>()
.AddTransient <ITempPatientBaselinesExtractRepository, TempPatientBaselinesExtractRepository>()
.AddTransient <ITempPatientLaboratoryExtractRepository, TempPatientLaboratoryExtractRepository>()
.AddTransient <ITempPatientPharmacyExtractRepository, TempPatientPharmacyExtractRepository>()
.AddTransient <ITempPatientStatusExtractRepository, TempPatientStatusExtractRepository>()
.AddTransient <ITempPatientVisitExtractRepository, TempPatientVisitExtractRepository>()
.AddTransient <IPatientExtractRepository, PatientExtractRepository>()
.AddTransient <IPatientArtExtractRepository, PatientArtExtractRepository>()
.AddTransient <IPatientBaselinesExtractRepository, PatientBaselinesExtractRepository>()
.AddTransient <IPatientLaboratoryExtractRepository, PatientLaboratoryExtractRepository>()
.AddTransient <IPatientPharmacyExtractRepository, PatientPharmacyExtractRepository>()
.AddTransient <IPatientStatusExtractRepository, PatientStatusExtractRepository>()
.AddTransient <IPatientVisitExtractRepository, PatientVisitExtractRepository>()
.AddTransient <ITempHTSClientExtractRepository, TempHTSClientExtractRepository>()
.AddTransient <ITempHTSClientLinkageExtractRepository, TempHTSClientLinkageExtractRepository>()
.AddTransient <ITempHTSClientPartnerExtractRepository, TempHTSClientPartnerExtractRepository>()
.AddTransient <IHTSClientExtractRepository, HTSClientExtractRepository>()
.AddTransient <IHTSClientLinkageExtractRepository, HTSClientLinkageExtractRepository>()
.AddTransient <IHTSClientPartnerExtractRepository, HTSClientPartnerExtractRepository>()
.AddTransient <ICleanCbsExtracts, CleanCbsExtracts>()
.AddTransient <IClearDwhExtracts, ClearDwhExtracts>()
.AddTransient <ICleanHtsExtracts, CleanHtsExtracts>()
.AddTransient <IMasterPatientIndexReader, MasterPatientIndexReader>()
.AddTransient <IExtractSourceReader, ExtractSourceReader>()
.AddTransient <IHTSExtractSourceReader, HTSExtractSourceReader>()
.AddTransient <IPatientSourceExtractor, PatientSourceExtractor>()
.AddTransient <IPatientStatusSourceExtractor, PatientStatusSourceExtractor>()
.AddTransient <IPatientArtSourceExtractor, PatientArtSourceExtractor>()
.AddTransient <IPatientBaselinesSourceExtractor, PatientBaselinesSourceExtractor>()
.AddTransient <IPatientPharmacySourceExtractor, PatientPharmacySourceExtractor>()
.AddTransient <IPatientVisitSourceExtractor, PatientVisitSourceExtractor>()
.AddTransient <IPatientLaboratorySourceExtractor, PatientLaboratorySourceExtractor>()
.AddTransient <IHTSClientSourceExtractor, HTSClientSourceExtractor>()
.AddTransient <IHTSClientLinkageSourceExtractor, HTSClientLinkageSourceExtractor>()
.AddTransient <IHTSClientPartnerSourceExtractor, HTSClientPartnerSourceExtractor>()
.AddTransient <IMasterPatientIndexSourceExtractor, MasterPatientIndexSourceExtractor>()
.AddTransient <IMasterPatientIndexLoader, MasterPatientIndexLoader>()
.AddTransient <IPatientLoader, PatientLoader>()
.AddTransient <IPatientArtLoader, PatientArtLoader>()
.AddTransient <IPatientBaselinesLoader, PatientBaselinesLoader>()
.AddTransient <IPatientLaboratoryLoader, PatientLaboratoryLoader>()
.AddTransient <IPatientPharmacyLoader, PatientPharmacyLoader>()
.AddTransient <IPatientStatusLoader, PatientStatusLoader>()
.AddTransient <IPatientVisitLoader, PatientVisitLoader>()
.AddTransient <IHTSClientLoader, HTSClientLoader>()
.AddTransient <IHTSClientLinkageLoader, HTSClientLinkageLoader>()
.AddTransient <IHTSClientPartnerLoader, HTSClientPartnerLoader>()
.AddTransient <IEmrMetricRepository, EmrMetricRepository>()
.AddTransient <IEmrMetricsService, EmrMetricsService>()
.AddTransient <IAppDatabaseManager, AppDatabaseManager>()
.AddMediatR(typeof(ExtractMasterPatientIndexHandler))
.BuildServiceProvider();
var serviceProviderMysql = new ServiceCollection()
.AddDbContext <ExtractsContext>(x => x.UseMySql(mysqlConfig["ConnectionStrings:DwapiConnection"]))
.AddDbContext <SettingsContext>(x => x.UseMySql(mysqlConfig["ConnectionStrings:DwapiConnection"]))
.AddTransient <ExtractsContext>()
.AddTransient <SettingsContext>()
.AddTransient <IExtractHistoryRepository, ExtractHistoryRepository>()
.AddTransient <IValidatorRepository, ValidatorRepository>()
.AddTransient <ITempMasterPatientIndexRepository, TempMasterPatientIndexRepository>()
.AddTransient <IMasterPatientIndexRepository, MasterPatientIndexRepository>()
.AddTransient <ITempPatientExtractRepository, TempPatientExtractRepository>()
.AddTransient <ITempPatientArtExtractRepository, TempPatientArtExtractRepository>()
.AddTransient <ITempPatientBaselinesExtractRepository, TempPatientBaselinesExtractRepository>()
.AddTransient <ITempPatientLaboratoryExtractRepository, TempPatientLaboratoryExtractRepository>()
.AddTransient <ITempPatientPharmacyExtractRepository, TempPatientPharmacyExtractRepository>()
.AddTransient <ITempPatientStatusExtractRepository, TempPatientStatusExtractRepository>()
.AddTransient <ITempPatientVisitExtractRepository, TempPatientVisitExtractRepository>()
.AddTransient <IPatientExtractRepository, PatientExtractRepository>()
.AddTransient <IPatientArtExtractRepository, PatientArtExtractRepository>()
.AddTransient <IPatientBaselinesExtractRepository, PatientBaselinesExtractRepository>()
.AddTransient <IPatientLaboratoryExtractRepository, PatientLaboratoryExtractRepository>()
.AddTransient <IPatientPharmacyExtractRepository, PatientPharmacyExtractRepository>()
.AddTransient <IPatientStatusExtractRepository, PatientStatusExtractRepository>()
.AddTransient <IPatientVisitExtractRepository, PatientVisitExtractRepository>()
.AddTransient <ITempHTSClientExtractRepository, TempHTSClientExtractRepository>()
.AddTransient <ITempHTSClientLinkageExtractRepository, TempHTSClientLinkageExtractRepository>()
.AddTransient <ITempHTSClientPartnerExtractRepository, TempHTSClientPartnerExtractRepository>()
.AddTransient <IHTSClientExtractRepository, HTSClientExtractRepository>()
.AddTransient <IHTSClientLinkageExtractRepository, HTSClientLinkageExtractRepository>()
.AddTransient <IHTSClientPartnerExtractRepository, HTSClientPartnerExtractRepository>()
.AddTransient <ICleanCbsExtracts, CleanCbsExtracts>()
.AddTransient <IClearDwhExtracts, ClearDwhExtracts>()
.AddTransient <ICleanHtsExtracts, CleanHtsExtracts>()
.AddTransient <IMasterPatientIndexReader, MasterPatientIndexReader>()
.AddTransient <IExtractSourceReader, ExtractSourceReader>()
.AddTransient <IHTSExtractSourceReader, HTSExtractSourceReader>()
.AddTransient <IPatientSourceExtractor, PatientSourceExtractor>()
.AddTransient <IPatientStatusSourceExtractor, PatientStatusSourceExtractor>()
.AddTransient <IPatientArtSourceExtractor, PatientArtSourceExtractor>()
.AddTransient <IPatientBaselinesSourceExtractor, PatientBaselinesSourceExtractor>()
.AddTransient <IPatientPharmacySourceExtractor, PatientPharmacySourceExtractor>()
.AddTransient <IPatientVisitSourceExtractor, PatientVisitSourceExtractor>()
.AddTransient <IPatientLaboratorySourceExtractor, PatientLaboratorySourceExtractor>()
.AddTransient <IHTSClientSourceExtractor, HTSClientSourceExtractor>()
.AddTransient <IHTSClientLinkageSourceExtractor, HTSClientLinkageSourceExtractor>()
.AddTransient <IHTSClientPartnerSourceExtractor, HTSClientPartnerSourceExtractor>()
.AddMediatR(typeof(ExtractMasterPatientIndexHandler))
.AddTransient <IMasterPatientIndexSourceExtractor, MasterPatientIndexSourceExtractor>()
.AddTransient <IMasterPatientIndexLoader, MasterPatientIndexLoader>()
.AddTransient <IPatientLoader, PatientLoader>()
.AddTransient <IPatientArtLoader, PatientArtLoader>()
.AddTransient <IPatientBaselinesLoader, PatientBaselinesLoader>()
.AddTransient <IPatientLaboratoryLoader, PatientLaboratoryLoader>()
.AddTransient <IPatientPharmacyLoader, PatientPharmacyLoader>()
.AddTransient <IPatientStatusLoader, PatientStatusLoader>()
.AddTransient <IPatientVisitLoader, PatientVisitLoader>()
.AddTransient <IHTSClientLoader, HTSClientLoader>()
.AddTransient <IHTSClientLinkageLoader, HTSClientLinkageLoader>()
.AddTransient <IHTSClientPartnerLoader, HTSClientPartnerLoader>()
.AddTransient <IEmrMetricRepository, EmrMetricRepository>()
.AddTransient <IEmrMetricsService, EmrMetricsService>()
.AddTransient <IAppDatabaseManager, AppDatabaseManager>()
.BuildServiceProvider();
ServiceProvider = serviceProvider;
ServiceProviderMysql = serviceProviderMysql;
var settingsContext = serviceProvider.GetService <SettingsContext>();
var settingsContextMysql = serviceProviderMysql.GetService <SettingsContext>();
var extractsContext = serviceProvider.GetService <ExtractsContext>();
var extractsContextMysql = serviceProviderMysql.GetService <ExtractsContext>();
Iqtools = settingsContext.EmrSystems
.Include(x => x.DatabaseProtocols)
.Include(x => x.Extracts)
.First(x => x.Id == new Guid("a62216ee-0e85-11e8-ba89-0ed5f89f718b"));
KenyaEmr = settingsContextMysql.EmrSystems
.Include(x => x.DatabaseProtocols)
.Include(x => x.Extracts)
.First(x => x.Id == new Guid("a6221856-0e85-11e8-ba89-0ed5f89f718b"));
Validator = extractsContext.Validator.First();
var dbmanager = ServiceProvider.GetService <IAppDatabaseManager>();
IqToolsDatabase = dbmanager.ReadConnection(settingsContext.Database.GetDbConnection().ConnectionString,
DatabaseProvider.MsSql);
IQtoolsDbProtocol =
Iqtools.DatabaseProtocols.First(x => x.DatabaseName.ToLower().Contains("iqtools".ToLower()));
IQtoolsDbProtocol.Host = IqToolsDatabase.Server;
IQtoolsDbProtocol.Username = IqToolsDatabase.User;
IQtoolsDbProtocol.Password = IqToolsDatabase.Password;
KenyaEmrDatabase = dbmanager.ReadConnection(settingsContextMysql.Database.GetDbConnection().ConnectionString, DatabaseProvider.MySql);
KenyaEmrDbProtocol = KenyaEmr.DatabaseProtocols.First();
KenyaEmrDbProtocol.Host = KenyaEmrDatabase.Server;
KenyaEmrDbProtocol.Username = KenyaEmrDatabase.User;
KenyaEmrDbProtocol.Password = KenyaEmrDatabase.Password;
/*try
* {
* settingsContext.Database.Migrate();
* settingsContext.EnsureSeeded();
*
* settingsContextMysql.Database.Migrate();
* settingsContextMysql.EnsureSeeded();
*
* extractsContext.Database.Migrate();
* extractsContext.EnsureSeeded();
*
* extractsContextMysql.Database.Migrate();
* extractsContextMysql.EnsureSeeded();
*
* Iqtools = settingsContext.EmrSystems
* .Include(x => x.DatabaseProtocols)
* .Include(x => x.Extracts)
* .First(x => x.Id == new Guid("a62216ee-0e85-11e8-ba89-0ed5f89f718b"));
*
* KenyaEmr = settingsContextMysql.EmrSystems
* .Include(x => x.DatabaseProtocols)
* .Include(x => x.Extracts)
* .First(x => x.Id == new Guid("a6221856-0e85-11e8-ba89-0ed5f89f718b"));
*
* Validator = extractsContext.Validator.First();
* }
* catch (Exception e)
* {
* Console.WriteLine(e);
* }*/
Mapper.Initialize(cfg =>
{
cfg.AddDataReaderMapping();
cfg.AddProfile <TempMasterPatientIndexProfile>();
cfg.AddProfile <TempExtractProfile>();
cfg.AddProfile <TempHtsExtractProfile>();
cfg.AddProfile <EmrProfiles>();
}
);
}
public void SaveEmr(EmrSystem emrSystem)
{
_emrSystemRepository.CreateOrUpdate(emrSystem);
_emrSystemRepository.SaveChanges();
}
public void Setup()
{
var config = new ConfigurationBuilder()
.AddJsonFile("appsettings.json")
.Build();
var mysqlConfig = new ConfigurationBuilder()
.AddJsonFile("appsettings.mysql.json")
.Build();
var serviceProvider = new ServiceCollection()
.AddDbContext <ExtractsContext>(x => x.UseSqlServer(config["ConnectionStrings:DwapiConnection"]))
.AddDbContext <SettingsContext>(x => x.UseSqlServer(config["ConnectionStrings:DwapiConnection"]))
.AddTransient <IExtractHistoryRepository, ExtractHistoryRepository>()
.AddTransient <ITempMasterPatientIndexRepository, TempMasterPatientIndexRepository>()
.AddTransient <IMasterPatientIndexRepository, MasterPatientIndexRepository>()
.AddTransient <ITempPatientExtractRepository, TempPatientExtractRepository>()
.AddTransient <ITempPatientArtExtractRepository, TempPatientArtExtractRepository>()
.AddTransient <ITempPatientBaselinesExtractRepository, TempPatientBaselinesExtractRepository>()
.AddTransient <ITempPatientLaboratoryExtractRepository, TempPatientLaboratoryExtractRepository>()
.AddTransient <ITempPatientPharmacyExtractRepository, TempPatientPharmacyExtractRepository>()
.AddTransient <ITempPatientStatusExtractRepository, TempPatientStatusExtractRepository>()
.AddTransient <ITempPatientVisitExtractRepository, TempPatientVisitExtractRepository>()
.AddTransient <IPatientExtractRepository, PatientExtractRepository>()
.AddTransient <IPatientArtExtractRepository, PatientArtExtractRepository>()
.AddTransient <IPatientBaselinesExtractRepository, PatientBaselinesExtractRepository>()
.AddTransient <IPatientLaboratoryExtractRepository, PatientLaboratoryExtractRepository>()
.AddTransient <IPatientPharmacyExtractRepository, PatientPharmacyExtractRepository>()
.AddTransient <IPatientStatusExtractRepository, PatientStatusExtractRepository>()
.AddTransient <IPatientVisitExtractRepository, PatientVisitExtractRepository>()
.AddTransient <ICleanCbsExtracts, CleanCbsExtracts>()
.AddTransient <IClearDwhExtracts, ClearDwhExtracts>()
.AddTransient <IMasterPatientIndexReader, MasterPatientIndexReader>()
.AddTransient <IExtractSourceReader, ExtractSourceReader>()
.AddTransient <IPatientSourceExtractor, PatientSourceExtractor>()
.AddTransient <IPatientStatusSourceExtractor, PatientStatusSourceExtractor>()
.AddTransient <IPatientArtSourceExtractor, PatientArtSourceExtractor>()
.AddTransient <IPatientBaselinesSourceExtractor, PatientBaselinesSourceExtractor>()
.AddTransient <IPatientPharmacySourceExtractor, PatientPharmacySourceExtractor>()
.AddTransient <IPatientVisitSourceExtractor, PatientVisitSourceExtractor>()
.AddTransient <IPatientLaboratorySourceExtractor, PatientLaboratorySourceExtractor>()
.AddTransient <IMasterPatientIndexSourceExtractor, MasterPatientIndexSourceExtractor>()
.AddTransient <IMasterPatientIndexLoader, MasterPatientIndexLoader>()
.AddTransient <IPatientLoader, PatientLoader>()
.AddTransient <IPatientArtLoader, PatientArtLoader>()
.AddTransient <IPatientBaselinesLoader, PatientBaselinesLoader>()
.AddTransient <IPatientLaboratoryLoader, PatientLaboratoryLoader>()
.AddTransient <IPatientPharmacyLoader, PatientPharmacyLoader>()
.AddTransient <IPatientStatusLoader, PatientStatusLoader>()
.AddTransient <IPatientVisitLoader, PatientVisitLoader>()
.AddMediatR(typeof(ExtractMasterPatientIndexHandler))
.BuildServiceProvider();
var serviceProviderMysql = new ServiceCollection()
.AddDbContext <ExtractsContext>(x => x.UseMySql(mysqlConfig["ConnectionStrings:DwapiConnection"]))
.AddDbContext <SettingsContext>(x => x.UseMySql(mysqlConfig["ConnectionStrings:DwapiConnection"]))
.AddTransient <ExtractsContext>()
.AddTransient <SettingsContext>()
.AddTransient <IExtractHistoryRepository, ExtractHistoryRepository>()
.AddTransient <ITempMasterPatientIndexRepository, TempMasterPatientIndexRepository>()
.AddTransient <IMasterPatientIndexRepository, MasterPatientIndexRepository>()
.AddTransient <ITempPatientExtractRepository, TempPatientExtractRepository>()
.AddTransient <ITempPatientArtExtractRepository, TempPatientArtExtractRepository>()
.AddTransient <ITempPatientBaselinesExtractRepository, TempPatientBaselinesExtractRepository>()
.AddTransient <ITempPatientLaboratoryExtractRepository, TempPatientLaboratoryExtractRepository>()
.AddTransient <ITempPatientPharmacyExtractRepository, TempPatientPharmacyExtractRepository>()
.AddTransient <ITempPatientStatusExtractRepository, TempPatientStatusExtractRepository>()
.AddTransient <ITempPatientVisitExtractRepository, TempPatientVisitExtractRepository>()
.AddTransient <IPatientExtractRepository, PatientExtractRepository>()
.AddTransient <IPatientArtExtractRepository, PatientArtExtractRepository>()
.AddTransient <IPatientBaselinesExtractRepository, PatientBaselinesExtractRepository>()
.AddTransient <IPatientLaboratoryExtractRepository, PatientLaboratoryExtractRepository>()
.AddTransient <IPatientPharmacyExtractRepository, PatientPharmacyExtractRepository>()
.AddTransient <IPatientStatusExtractRepository, PatientStatusExtractRepository>()
.AddTransient <IPatientVisitExtractRepository, PatientVisitExtractRepository>()
.AddTransient <ICleanCbsExtracts, CleanCbsExtracts>()
.AddTransient <IClearDwhExtracts, ClearDwhExtracts>()
.AddTransient <IMasterPatientIndexReader, MasterPatientIndexReader>()
.AddTransient <IExtractSourceReader, ExtractSourceReader>()
.AddTransient <IPatientSourceExtractor, PatientSourceExtractor>()
.AddTransient <IPatientStatusSourceExtractor, PatientStatusSourceExtractor>()
.AddTransient <IPatientArtSourceExtractor, PatientArtSourceExtractor>()
.AddTransient <IPatientBaselinesSourceExtractor, PatientBaselinesSourceExtractor>()
.AddTransient <IPatientPharmacySourceExtractor, PatientPharmacySourceExtractor>()
.AddTransient <IPatientVisitSourceExtractor, PatientVisitSourceExtractor>()
.AddTransient <IPatientLaboratorySourceExtractor, PatientLaboratorySourceExtractor>()
.AddMediatR(typeof(ExtractMasterPatientIndexHandler))
.AddTransient <IMasterPatientIndexSourceExtractor, MasterPatientIndexSourceExtractor>()
.AddTransient <IMasterPatientIndexLoader, MasterPatientIndexLoader>()
.AddTransient <IPatientLoader, PatientLoader>()
.AddTransient <IPatientArtLoader, PatientArtLoader>()
.AddTransient <IPatientBaselinesLoader, PatientBaselinesLoader>()
.AddTransient <IPatientLaboratoryLoader, PatientLaboratoryLoader>()
.AddTransient <IPatientPharmacyLoader, PatientPharmacyLoader>()
.AddTransient <IPatientStatusLoader, PatientStatusLoader>()
.AddTransient <IPatientVisitLoader, PatientVisitLoader>()
.BuildServiceProvider();
ServiceProvider = serviceProvider;
ServiceProviderMysql = serviceProviderMysql;
var settingsContext = serviceProvider.GetService <SettingsContext>();
var settingsContextMysql = serviceProviderMysql.GetService <SettingsContext>();
var extractsContext = serviceProvider.GetService <ExtractsContext>();
var extractsContextMysql = serviceProviderMysql.GetService <ExtractsContext>();
settingsContext.Database.Migrate();
settingsContext.EnsureSeeded();
settingsContextMysql.Database.Migrate();
settingsContextMysql.EnsureSeeded();
extractsContext.Database.Migrate();
extractsContext.EnsureSeeded();
extractsContextMysql.Database.Migrate();
extractsContextMysql.EnsureSeeded();
Iqtools = settingsContext.EmrSystems
.Include(x => x.DatabaseProtocols)
.Include(x => x.Extracts)
.First(x => x.Id == new Guid("a62216ee-0e85-11e8-ba89-0ed5f89f718b"));
KenyaEmr = settingsContextMysql.EmrSystems
.Include(x => x.DatabaseProtocols)
.Include(x => x.Extracts)
.First(x => x.Id == new Guid("a6221856-0e85-11e8-ba89-0ed5f89f718b"));
Validator = extractsContext.Validator.First();
Mapper.Initialize(cfg =>
{
cfg.AddDataReaderMapping();
cfg.AddProfile <TempMasterPatientIndexProfile>();
cfg.AddProfile <TempExtractProfile>();
}
);
}
