public EGFRToALKReflexAnalysisROS1Result(YellowstonePathology.Business.Test.AccessionOrder accessionOrder,
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisResult egfrMutationAnalysisResult,
YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder egfrToALKReflexAnalysisTestOrder)
: base(accessionOrder, 204)
{
if (egfrToALKReflexAnalysisTestOrder.QNSForROS1 == true)
{
this.m_Status = EGFRToALKReflexAnalysisElementStatusEnum.QNS;
}
else
{
if (egfrMutationAnalysisResult != null)
{
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisDetectedResult egfrMutationAnalysisDetectedResult = new EGFRMutationAnalysis.EGFRMutationAnalysisDetectedResult();
if (egfrMutationAnalysisResult.ResultCode == egfrMutationAnalysisDetectedResult.ResultCode)
{
if(this.m_Ordered == true)
{
if (this.m_Final == true)
{
YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHResultCollection ros1ByFISHResultCollection = new YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHResultCollection();
YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder ros1ByFISHTestOrder = (YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder)this.m_PanelSetOrder;
this.m_ResultAbbreviation = ros1ByFISHResultCollection.GetByResultCode(ros1ByFISHTestOrder.ResultCode).ResultAbbreviation;
this.m_Status = EGFRToALKReflexAnalysisElementStatusEnum.Final;
}
else
{
this.m_Status = EGFRToALKReflexAnalysisElementStatusEnum.Pending;
}
}
else
{
this.m_Status = EGFRToALKReflexAnalysisElementStatusEnum.NotIndicated;
}
//this.m_Status = EGFRToALKReflexAnalysisElementStatusEnum.NotIndicated;
}
else
{
if (this.m_Ordered == false)
{
this.m_Status = EGFRToALKReflexAnalysisElementStatusEnum.OrderRequired;
}
if (this.m_Final == true)
{
YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHResultCollection ros1ByFISHResultCollection = new YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHResultCollection();
YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder ros1ByFISHTestOrder = (YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder)this.m_PanelSetOrder;
this.m_ResultAbbreviation = ros1ByFISHResultCollection.GetByResultCode(ros1ByFISHTestOrder.ResultCode).ResultAbbreviation;
}
}
}
else
{
this.m_Status = EGFRToALKReflexAnalysisElementStatusEnum.Pending;
}
}
}
public EGFRToALKReflexAnalysisALKResult(YellowstonePathology.Business.Test.AccessionOrder accessionOrder,
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisResult egfrMutationAnalysisResult,
YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder egfrToALKReflexAnalysisTestOrder)
: base(accessionOrder, 131)
{
if (egfrToALKReflexAnalysisTestOrder.QNSForALK == true)
{
this.m_Status = EGFRToALKReflexAnalysisElementStatusEnum.QNS;
}
else
{
if (egfrMutationAnalysisResult != null)
{
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisDetectedResult egfrMutationAnalysisDetectedResult = new EGFRMutationAnalysis.EGFRMutationAnalysisDetectedResult();
if (egfrMutationAnalysisResult.ResultCode == egfrMutationAnalysisDetectedResult.ResultCode)
{
this.m_Status = EGFRToALKReflexAnalysisElementStatusEnum.NotIndicated;
}
else
{
if (this.m_Ordered == false)
{
this.m_Status = EGFRToALKReflexAnalysisElementStatusEnum.OrderRequired;
}
else if (this.m_Final == true)
{
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHResultCollection alkForNSCLCByFISHResultCollection = new ALKForNSCLCByFISH.ALKForNSCLCByFISHResultCollection();
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkForNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder) this.m_PanelSetOrder;
this.m_ResultAbbreviation = alkForNSCLCByFISHResultCollection.GetByResultCode(alkForNSCLCByFISHTestOrder.ResultCode).ResultAbbreviation;
}
}
}
else
{
this.m_Status = EGFRToALKReflexAnalysisElementStatusEnum.Pending;
}
}
}
public override void Render()
{
this.m_TemplateName = @"\\CFileServer\Documents\ReportTemplates\XmlTemplates\EGFRToALKReflexAnalysis.7.xml";
this.OpenTemplate();
this.SetDemographicsV2();
this.SetReportDistribution();
YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder egfrToALKReflexAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder)this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(124);
base.ReplaceText("report_title", egfrToALKReflexAnalysisTestOrder.PanelSetName);
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder)this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60);
base.ReplaceText("egfr_result", egfrMutationAnalysisTestOrder.Result);
base.SetXMLNodeParagraphData("egfr_comment", egfrMutationAnalysisTestOrder.Comment);
YellowstonePathology.Business.Document.AmendmentSection amendmentSection = new YellowstonePathology.Business.Document.AmendmentSection();
amendmentSection.SetAmendment(egfrToALKReflexAnalysisTestOrder.AmendmentCollection, this.m_ReportXml, this.m_NameSpaceManager, true);
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisDetectedResult egfrMutationAnalysisDetectedResult = new EGFRMutationAnalysis.EGFRMutationAnalysisDetectedResult();
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(131) == true)
{
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkForNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder)this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(131);
base.ReplaceText("alk_result", alkForNSCLCByFISHTestOrder.Result);
}
else if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(68) == true)
{
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrderReportedSeparately alkForNSCLCByFISHTestOrderReportedSeparately = new YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrderReportedSeparately();
base.ReplaceText("alk_result", alkForNSCLCByFISHTestOrderReportedSeparately.Result);
}
else if (egfrToALKReflexAnalysisTestOrder.QNSForALK == true)
{
base.ReplaceText("alk_result", "Quantity not sufficient to perform ALK");
base.ReplaceText("ros1_result", "Quantity not sufficient to perform ROS1");
}
else if (egfrMutationAnalysisTestOrder.ResultCode == egfrMutationAnalysisDetectedResult.ResultCode)
{
base.ReplaceText("alk_result", "Not Indicated");
}
else
{
base.ReplaceText("alk_result", "ALK not performed");
}
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(204) == true)
{
YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder ros1ByFISHTestOrder = (YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder)this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(204);
base.ReplaceText("ros1_result", ros1ByFISHTestOrder.Result);
}
else if (egfrMutationAnalysisTestOrder.ResultCode == egfrMutationAnalysisDetectedResult.ResultCode)
{
base.ReplaceText("ros1_result", "Not Indicated");
}
else
{
base.ReplaceText("ros1_result", "ROS1 not performed");
}
base.SetXMLNodeParagraphData("report_interpretation", egfrToALKReflexAnalysisTestOrder.Interpretation);
this.ReplaceText("report_date", BaseData.GetShortDateString(egfrToALKReflexAnalysisTestOrder.FinalDate));
this.ReplaceText("pathologist_signature", egfrToALKReflexAnalysisTestOrder.Signature);
this.SetXMLNodeParagraphData("report_method", egfrToALKReflexAnalysisTestOrder.Method);
this.SetXMLNodeParagraphData("report_references", egfrToALKReflexAnalysisTestOrder.ReportReferences);
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(egfrToALKReflexAnalysisTestOrder.OrderedOnId);
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrder(egfrToALKReflexAnalysisTestOrder.OrderedOn, egfrMutationAnalysisTestOrder.OrderedOnId);
string specimenDescription = specimenOrder.Description + ", Block " + aliquotOrder.Label;
this.ReplaceText("specimen_description", specimenDescription);
string collectionDateTimeString = YellowstonePathology.Business.Helper.DateTimeExtensions.CombineDateAndTime(specimenOrder.CollectionDate, specimenOrder.CollectionTime);
this.SetXmlNodeData("date_time_collected", collectionDateTimeString);
this.ReplaceText("tumor_nuclei_percentage", egfrToALKReflexAnalysisTestOrder.TumorNucleiPercentage);
this.SaveReport();
}
public override void Render()
{
this.m_TemplateName = @"\\CFileServer\Documents\ReportTemplates\XmlTemplates\EGFRToALKReflexAnalysis.4.xml";
this.OpenTemplate();
this.SetDemographicsV2();
this.SetReportDistribution();
YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder egfrToALKReflexAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(124);
base.ReplaceText("report_title", egfrToALKReflexAnalysisTestOrder.PanelSetName);
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60);
base.ReplaceText("egfr_result", egfrMutationAnalysisTestOrder.Result);
base.SetXMLNodeParagraphData("egfr_comment", egfrMutationAnalysisTestOrder.Comment);
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisDetectedResult egfrMutationAnalysisDetectedResult = new EGFRMutationAnalysis.EGFRMutationAnalysisDetectedResult();
if (egfrMutationAnalysisTestOrder.ResultCode == egfrMutationAnalysisDetectedResult.ResultCode)
{
base.ReplaceText("alk_result", "Not Indicated");
base.ReplaceText("ros1_result", "Not Indicated");
base.ReplaceText("pdl1_result", "Not Indicated");
}
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(131) == true)
{
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkForNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(131);
base.ReplaceText("alk_result", alkForNSCLCByFISHTestOrder.Result);
}
else if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(68) == true)
{
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrderReportedSeparately alkForNSCLCByFISHTestOrderReportedSeparately = new YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrderReportedSeparately();
base.ReplaceText("alk_result", alkForNSCLCByFISHTestOrderReportedSeparately.Result);
}
else if (egfrToALKReflexAnalysisTestOrder.QNSForALK == true)
{
base.ReplaceText("alk_result", "Quantity not sufficient to perform ALK");
}
else
{
base.ReplaceText("alk_result", "ALK not performed");
}
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(204) == true)
{
YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder ros1ByFISHTestOrder = (YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(204);
base.ReplaceText("ros1_result", ros1ByFISHTestOrder.Result);
}
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(215) == true)
{
YellowstonePathology.Business.Test.PDL1.PDL1TestOrder pdl1TestOrder = (YellowstonePathology.Business.Test.PDL1.PDL1TestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(215);
base.ReplaceText("pdl1_result", pdl1TestOrder.Result);
}
if (egfrToALKReflexAnalysisTestOrder.QNSForPDL1 == true)
{
base.ReplaceText("pdl1_result", "Quantity not sufficient to perform PDL-1");
}
base.SetXMLNodeParagraphData("report_interpretation", egfrToALKReflexAnalysisTestOrder.Interpretation);
this.ReplaceText("report_date", BaseData.GetShortDateString(egfrToALKReflexAnalysisTestOrder.FinalDate));
this.ReplaceText("pathologist_signature", egfrToALKReflexAnalysisTestOrder.Signature);
this.SetXMLNodeParagraphData("report_method", egfrToALKReflexAnalysisTestOrder.Method);
this.SetXMLNodeParagraphData("report_references", egfrToALKReflexAnalysisTestOrder.References);
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(egfrToALKReflexAnalysisTestOrder.OrderedOnId);
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrder(egfrToALKReflexAnalysisTestOrder.OrderedOn, egfrMutationAnalysisTestOrder.OrderedOnId);
string specimenDescription = specimenOrder.Description + ", Block " + aliquotOrder.Label;
this.ReplaceText("specimen_description", specimenDescription);
string collectionDateTimeString = YellowstonePathology.Business.Helper.DateTimeExtensions.CombineDateAndTime(specimenOrder.CollectionDate, specimenOrder.CollectionTime);
this.SetXmlNodeData("date_time_collected", collectionDateTimeString);
this.ReplaceText("tumor_nuclei_percentage", egfrToALKReflexAnalysisTestOrder.TumorNucleiPercentage);
this.SaveReport();
}