private async void SearchDms()
{
var dmsLookupViewModel = new DmsLookupViewModel {
OutputDirectory = this.outputDirectory
};
var dialog = new DmsLookupView {
DataContext = dmsLookupViewModel
};
dmsLookupViewModel.DatasetSelected += (o, e) => dialog.Close();
dialog.ShowDialog();
if (!dmsLookupViewModel.Status)
{
return;
}
if (dmsLookupViewModel.ShouldCopyFiles)
{
this.InputFilePath = dmsLookupViewModel.OutputDirectory;
this.AddFolderCommand.Execute(null);
}
else
{
foreach (var dataset in dmsLookupViewModel.Datasets)
{
var filePaths = dataset.GetAvailableFiles();
if (filePaths.Count > 0)
{
await this.AddDatasets(filePaths);
}
}
}
}
/// <summary>
/// Implementation for <see cref="OpenFromDmsCommand" />.
/// Prompts the user for a dataset and job name from the PNNL DMS system.
/// </summary>
/// <returns>Task that opens a data set from DMS and adds it to the data set list.</returns>
private async Task OpenFromDmsImplementation()
{
var dmsLookUp = new DmsLookupViewModel(this.dialogService);
this.dialogService.OpenDmsLookup(dmsLookUp);
if (!dmsLookUp.ValidateDataSet() || !dmsLookUp.Status)
{
return; // data set was not chosen
}
try
{
var rawFilePaths = dmsLookUp.GetRawFileNames();
var idFilePath = dmsLookUp.GetIdFileName();
var featureFilePath = dmsLookUp.GetFeatureFileName();
foreach (var file in rawFilePaths)
{
var dataSetViewModel = await this.ReadRawFile(file);
if (dataSetViewModel.MsPfParameters == null)
{
dataSetViewModel.SetMsPfParameters(idFilePath);
}
// Set the dataset's FASTA file path
if (dataSetViewModel.MsPfParameters != null)
{
dataSetViewModel.FastaDbFilePath = string.Format(
"{0}\\{1}",
DmsLookupViewModel.FastaFilePath,
dataSetViewModel.MsPfParameters.DatabaseFile);
}
this.IdFileLoadProgress = 100;
this.IdFileLoading = true;
if (!string.IsNullOrWhiteSpace(dataSetViewModel.FastaDbFilePath) && File.Exists(dataSetViewModel.FastaDbFilePath))
{
await this.ScanViewModel.IdTree.AddFastaEntriesAsync(await this.dataReader.ReadFastaFile(dataSetViewModel.FastaDbFilePath));
}
await this.ReadIdFile(idFilePath, dataSetViewModel);
await this.dataReader.OpenDataSet(dataSetViewModel, file, featureFilePath : featureFilePath);
this.IdFileLoadProgress = 0;
this.IdFileLoading = false;
}
}
catch (Exception e)
{
this.dialogService.ExceptionAlert(e);
}
}
/// <summary>
/// Open a dialog to search for a file on DMS.
/// </summary>
/// <param name="dmsLookupViewModel">The view model for the dialog.</param>
/// <returns>The name of the data set and the name of the job selected.</returns>
public Tuple <string, string> OpenDmsLookup(DmsLookupViewModel dmsLookupViewModel)
{
var dmsLookupDialog = new DmsLookupView {
DataContext = dmsLookupViewModel
};
dmsLookupViewModel.ReadyToClose += (o, e) => dmsLookupDialog.Close();
dmsLookupDialog.ShowDialog();
Tuple <string, string> data = null;
if (dmsLookupViewModel.Status)
{
var dataSetFolderPath = (dmsLookupViewModel.SelectedDataset == null) ? string.Empty :
dmsLookupViewModel.SelectedDataset.DatasetFolderPath;
var jobFolderPath = (dmsLookupViewModel.SelectedJob == null) ? string.Empty :
dmsLookupViewModel.SelectedJob.JobFolderPath;
data = new Tuple <string, string>(dataSetFolderPath, jobFolderPath);
}
return(data);
}
private void SearchDms()
{
var dmsLookupViewModel = new DmsLookupViewModel { OutputDirectory = this.outputDirectory };
var dialog = new DmsLookupView { DataContext = dmsLookupViewModel };
dmsLookupViewModel.DatasetSelected += (o, e) => dialog.Close();
dialog.ShowDialog();
if (!dmsLookupViewModel.Status)
{
return;
}
if (dmsLookupViewModel.ShouldCopyFiles)
{
this.InputFilePath = dmsLookupViewModel.OutputDirectory;
this.AddFolderCommand.Execute(null);
}
else
{
var filePaths = dmsLookupViewModel.SelectedDataset.GetAvailableFiles();
if (filePaths.Count > 0)
{
this.AddDatasets(this.GetInputFilesFromPath(filePaths));
}
}
}
public Tuple <string, string> OpenDmsLookup(DmsLookupViewModel dmsLookupViewModel)
{
DmsLookupViewModel = dmsLookupViewModel;
DmsLookupOpened = true;
return(new Tuple <string, string>(_filePath, _filePath));
}
