public async Task <PatientDemographicContext> GetDemographicsAsync(DemographicCompilerContext context, CancellationToken token)
{
var exeContext = compiler.BuildDemographicSql(context, user.Anonymize());
log.LogInformation("Compiled Demographic Execution Context. Context:{@Context}", exeContext);
var demographic = await ExecuteDemographicsAsync(exeContext, token);
return(demographic);
}
CompilerContextState GetContextState(DemographicCompilerContext context)
{
if (context.DemographicQuery == null || string.IsNullOrWhiteSpace(context.DemographicQuery.SqlStatement))
{
log.LogError("No demographic query configured in Leaf database.");
return(CompilerContextState.DatasetNotFound);
}
if (!context.QueryContext.Found)
{
log.LogWarning("Incomplete demographic compiler context. Context:{@Context}", context);
return(CompilerContextState.QueryNotFound);
}
return(CompilerContextState.Ok);
}
public DemographicExecutionContext BuildDemographicSql(DemographicCompilerContext context, bool restrictPhi)
{
executionContext = new DemographicExecutionContext(context.Shape, context.QueryContext);
var cohort = CteCohortInternals(context.QueryContext);
new SqlValidator(Dialect.ILLEGAL_COMMANDS).Validate(context.DemographicQuery);
var dataset = CteDemographicInternals(context.DemographicQuery);
var filter = CteFilterInternals(context, restrictPhi);
var select = SelectFromCTE();
executionContext.CompiledQuery = Compose(cohort, dataset, filter, select);
return(executionContext);
}
string CteFilterInternals(DemographicCompilerContext context, bool restrictPhi)
{
var schema = ShapedDatasetContract.For(context.Shape);
if (!restrictPhi)
{
executionContext.FieldSelectors = schema.Fields;
return($"SELECT * FROM dataset");
}
bool include(SchemaFieldSelector field) => field.Required || !field.Phi || field.Mask;
var restricted = schema.Fields.Where(include);
executionContext.FieldSelectors = restricted;
var fields = string.Join(", ", restricted.Select(f => f.Name));
return($"SELECT {fields} FROM dataset");
}
