private UniprotEntry CopyEntry()
{
UniprotEntry newEntry = new UniprotEntry();
DbReferenceType[] dbRefTypes = new DbReferenceType[dbEntries.Keys.Count];
dbEntries.Keys.CopyTo(dbRefTypes, 0);
foreach (DbReferenceType refType in dbRefTypes){
string[] dbRefIDs = Get(refType);
foreach (string id in dbRefIDs){
newEntry.AddDbEntry(refType.UniprotName, id);
foreach (KeyValuePair<string, List<string>> property in dbEntries[refType][id].properties){
foreach (var propertyValue in property.Value){
newEntry.AddDbEntryProperty(refType.UniprotName, id, property.Key, propertyValue);
}
}
}
}
if (features != null){
foreach (FeatureType type in GetAllFeatureTypes()){
newEntry.AddFeatures(type, GetFeatures(type));
}
}
foreach (string kword in Keywords){
newEntry.AddKeyword(kword);
}
newEntry.ProteinFullNames = ProteinFullNames;
newEntry.ProteinShortNames = ProteinShortNames;
newEntry.ProteinEcNumbers = ProteinEcNumbers;
newEntry.Accessions = Accessions;
newEntry.GeneNamesAndTypes = GeneNamesAndTypes;
newEntry.OrganismNames = OrganismNames;
newEntry.UniprotNames = UniprotNames;
newEntry.Sequence = Sequence;
foreach (string taxId in taxonomyIds){
newEntry.AddTaxonomyId(taxId);
}
foreach (string hostTaxId in hostTaxonomyIds){
newEntry.AddHostTaxonomyId(hostTaxId);
}
return newEntry;
}
public string[] GetNames(DbReferenceType key)
{
if (!dbEntries.ContainsKey(key)){
return new string[0];
}
UniprotDbReference[] x = dbEntries[key].Values.ToArray();
string[] result = new string[x.Length];
for (int i = 0; i < x.Length; i++){
result[i] = x[i].GetPropertyValues("entry name")[0];
}
return result;
}
public UniprotDbReference[] GetDbEntries(DbReferenceType key)
{
return !dbEntries.ContainsKey(key) ? new UniprotDbReference[0] : dbEntries[key].Values.ToArray();
}
public UniprotDbReference[] GetDbEntries(DbReferenceType[] keys)
{
List<UniprotDbReference> result = new List<UniprotDbReference>();
foreach (DbReferenceType key in keys){
result.AddRange(GetDbEntries(key));
}
return result.ToArray();
}
public string[] Get(DbReferenceType[] keys)
{
List<string> result = new List<string>();
foreach (DbReferenceType key in keys){
result.AddRange(Get(key));
}
return result.ToArray();
}
public string[] Get(DbReferenceType key)
{
return !dbEntries.ContainsKey(key) ? new string[0] : dbEntries[key].Keys.ToArray();
}
