/// <summary>
/// Gets the list of active managers based on the atom type provided and based on the bond type in UIData.
/// </summary>
/// <returns>
/// The list of managers. A List<GenericManager> object that should contains the "atom" manager in position 0 and the "bond" manager in position 1 (if there is one).
/// </returns>
public static List <GenericManager> GetManagers()
{
UIData.AtomType aType = UIData.atomtype;
List <GenericManager> managerList = new List <GenericManager>();
if (aType == UIData.AtomType.hyperball) //|| UIData.bondtype == UIData.BondType.hyperstick) {
{
GameObject hbManagerObj = GameObject.FindGameObjectWithTag("HBallManager");
HBallManager hbManager = hbManagerObj.GetComponent <HBallManager>();
managerList.Add(hbManager);
}
else if (aType == UIData.AtomType.sphere)
{
GameObject spManagerObj = GameObject.FindGameObjectWithTag("SphereManager");
SphereManager spManager = spManagerObj.GetComponent <SphereManager>();
managerList.Add(spManager);
}
else if (aType == UIData.AtomType.cube)
{
GameObject cubeManagerObj = GameObject.FindGameObjectWithTag("CubeManager");
CubeManager cubeManager = cubeManagerObj.GetComponent <CubeManager>();
managerList.Add(cubeManager);
}
else if (aType == UIData.AtomType.particleball)
{
GameObject psObj = GameObject.FindGameObjectWithTag("ShurikenParticleManager");
ShurikenParticleManager shManager = psObj.GetComponent <ShurikenParticleManager>();
managerList.Add(shManager);
}
if (UIData.bondtype == UIData.BondType.line)
{
GameObject lineManagerObj = GameObject.FindGameObjectWithTag("LineManager");
LineManager lineManager = lineManagerObj.GetComponent <LineManager>();
managerList.Add(lineManager);
}
else if (UIData.bondtype == UIData.BondType.cube)
{
GameObject cubeBondManagerObj = GameObject.FindGameObjectWithTag("CubeBondManager");
CubeBondManager cubeBondManager = cubeBondManagerObj.GetComponent <CubeBondManager>();
managerList.Add(cubeBondManager);
}
else if (UIData.bondtype == UIData.BondType.hyperstick)
{
GameObject hStickManagerObj = GameObject.FindGameObjectWithTag("HStickManager");
HStickManager hStickManager = hStickManagerObj.GetComponent <HStickManager>();
managerList.Add(hStickManager);
}
return(managerList);
}
public void DisplayBonds()
{
if (UIData.bondtype == UIData.BondType.cube)
{
bondList = MoleculeModel.bondEPList;
MoleculeModel.bondsnumber = bondList.Count;
if (UIData.secondarystruct)
{
bondEPList = MoleculeModel.bondCAList;
}
else
{
bondEPList = MoleculeModel.bondEPList;
}
int Number = bondEPList.Count / number;
Debug.Log("DisplayBonds??bondList.Count " + bondList.Count);
for (int i = 0; i < Number; i++)
{
CreateCylinder(i * number);
}
GameObject cbManagerObj = GameObject.FindGameObjectWithTag("CubeBondManager");
CubeBondManager cbManager = cbManagerObj.GetComponent <CubeBondManager>();
cbManager.Init();
// HERE COMES THE BONDMANAGER
}
else if (UIData.bondtype == UIData.BondType.hyperstick)
{
if (UIData.secondarystruct)
{
bondEPList = MoleculeModel.bondCAList;
}
else
{
bondEPList = MoleculeModel.bondEPList;
}
Debug.Log("Bonds?? bondEPList.Count :: " + bondEPList.Count);
int Number = bondEPList.Count / number;
for (int i = 0; i < Number; i++)
{
CreateCylinderByShader(i * number);
}
GameObject hsManagerObj = GameObject.FindGameObjectWithTag("HStickManager");
HStickManager hsManager = hsManagerObj.GetComponent <HStickManager>();
hsManager.Init();
// GameObject hbManagerObj = GameObject.FindGameObjectWithTag("HBallManager");
// HBallManager hbManager = hbManagerObj.GetComponent<HBallManager>();
// hbManager.findBonds();
// if (UIData.atomtype == UIData.AtomType.hyperball)
// {
// if (hbManager.ellipsoidViewEnabled() == true)
// {
// Debug.Log ("+++++++++BONDCUBESTULE - Ellipsoid View enabled");
// hbManager.RenderEllipsoids();
// }
// else {
// Debug.Log ("+++++++++BONDCUBESTULE - Ellipsoid View disabled");
// hbManager.RenderAtoms();
// }
// }
}
else if (UIData.bondtype == UIData.BondType.bbhyperstick)
{
if (UIData.secondarystruct)
{
bondEPList = MoleculeModel.bondCAList;
}
else
{
bondEPList = MoleculeModel.bondEPList;
}
Debug.Log("DisplayBonds??bondEPList.Count " + bondEPList.Count);
int Number = bondEPList.Count / number;
for (int i = 0; i < Number; i++)
{
CreateBBCylinderByShader(i * number);
}
}
}
void Update()
{
IMDEnergies energies = new IMDEnergies();
if (MDDriver_isConnected())
{
// if (!logFPS)
// {
// logFPS = true;
// Molecule3DComp.toggleFPSLog ();
// }
MDDriver_getEnergies(ref energies);
// Debug.Log (energies.Etot);
PlotManager.Instance.PlotAdd("Total Energy", energies.Etot);
if (Input.GetKeyDown(KeyCode.A))
{
MDDriver_pause();
}
if (Input.GetKeyDown(KeyCode.Z))
{
MDDriver_play();
}
int readParticles = MDDriver_getNbParticles();
//Debug.Log("readParticles: " + readParticles);
if (readParticles != nbParticles)
{
Debug.Log("readParticles: " + readParticles);
nbParticles = readParticles;
pos2 = new float[nbParticles * 3];
}
else if (pos2.Length == readParticles * 3)
{
// Store retrieved positions but let managers update positions later
readParticles = MDDriver_getPositions(pos2, readParticles);
List <Vector3> lst = new List <Vector3>();
for (int i = 0; i < readParticles; i++)
{
lst.Add(new Vector3(pos2[i * 3], pos2[i * 3 + 1], pos2[i * 3 + 2]));
}
MoleculeModel.atomsMDDriverLocationlist = lst;
}
List <GenericManager> managers = Molecule.View.DisplayMolecule.GetManagers();
GenericManager atomManager = managers[0];
atomManager.ResetMDDriverPositions();
// Copied from DisplayMolecule.GetManagers
// Does not work otherwise. Why?
if (UIData.bondtype == UIData.BondType.line)
{
GameObject lineManagerObj = GameObject.FindGameObjectWithTag("LineManager");
LineManager lineManager = lineManagerObj.GetComponent <LineManager>();
lineManager.ResetPositions();
}
else if (UIData.bondtype == UIData.BondType.cube)
{
GameObject cubeBondManagerObj = GameObject.FindGameObjectWithTag("CubeBondManager");
CubeBondManager cubeBondManager = cubeBondManagerObj.GetComponent <CubeBondManager>();
cubeBondManager.ResetPositions();
}
else if (UIData.bondtype == UIData.BondType.hyperstick)
{
GameObject hStickManagerObj = GameObject.FindGameObjectWithTag("HStickManager");
HStickManager hStickManager = hStickManagerObj.GetComponent <HStickManager>();
hStickManager.ResetPositions();
}
if (MDDriver.hb)
{
// Debug.Log (RNAView.findHbonds().Count);
// List<int[]> hbonds = RNAView.findHbonds();
// Debug.Log (bonds.Count + " bonds found");
// int sequenceLength = MoleculeModel.sequence.Count();
// string structure = VARNA.generateStructureString(sequenceLength, hbonds);
// VARNA.generateImage(MoleculeModel.sequence, structure, "test.png");
}
}
else
{
Debug.Log("Not connected...");
}
}
