public void GetEntries()
{
var readStream = ResourceUtilities.GetReadStream(Resources.SaPath("CosmicCNV.tsv"));
var cnvReader = new CosmicCnvReader(readStream,
ChromosomeUtilities.RefNameToChromosome,
GenomeAssembly.GRCh37);
var cnvItems = cnvReader.GetEntries();
Assert.Equal(5, cnvItems.Count());
}
public void GetEntries()
{
var readStream = ResourceUtilities.GetReadStream(Resources.TopPath("SA\\CosmicCNV.tsv"));
var cnvReader = new CosmicCnvReader(readStream,
new Dictionary <string, IChromosome>()
{
{ "17", new Chromosome("chr17", "17", 1) },
{ "Y", new Chromosome("chrY", "Y", 2) },
{ "MT", new Chromosome("chrM", "MT", 3) }
},
GenomeAssembly.GRCh37);
var cnvItems = cnvReader.GetEntries();
Assert.Equal(5, cnvItems.Count());
}