private void AnnotateTokens <Token>(IList <TOKEN> tokens)
where Token : CoreLabel
{
// Make a copy of the tokens before annotating because QuantifiableEntityNormalizer may change the POS too
IList <CoreLabel> words = new List <CoreLabel>();
foreach (CoreLabel token in tokens)
{
CoreLabel word = new CoreLabel();
word.SetWord(token.Word());
word.SetNER(token.Ner());
word.SetTag(token.Tag());
// copy fields potentially set by SUTime
NumberSequenceClassifier.TransferAnnotations(token, word);
words.Add(word);
}
DoOneSentence(words);
// TODO: If collapsed is set, tokens for entities are collapsed into one node then
// (words.size() != tokens.size() and the logic below just don't work!!!
for (int i = 0; i < words.Count; i++)
{
string ner = words[i].Ner();
tokens[i].SetNER(ner);
tokens[i].Set(typeof(CoreAnnotations.NormalizedNamedEntityTagAnnotation), words[i].Get(typeof(CoreAnnotations.NormalizedNamedEntityTagAnnotation)));
}
}
private CoreLabel MakeXmlToken(string tokenText, bool doNormalization, int charOffsetBegin, int charOffsetEnd)
{
CoreLabel token = new CoreLabel();
token.SetOriginalText(tokenText);
if (separatorPattern.Matcher(tokenText).Matches())
{
// Map to CoreNLP newline token
tokenText = AbstractTokenizer.NewlineToken;
}
else
{
if (doNormalization && normalizeSpace)
{
tokenText = tokenText.Replace(' ', '\u00A0');
}
}
// change space to non-breaking space
token.SetWord(tokenText);
token.SetValue(tokenText);
token.Set(typeof(CoreAnnotations.CharacterOffsetBeginAnnotation), charOffsetBegin);
token.Set(typeof(CoreAnnotations.CharacterOffsetEndAnnotation), charOffsetEnd);
if (Verbose)
{
log.Info("Adding token " + token.ToShorterString());
}
return(token);
}
/// <summary>
/// Only works on English, as it is hard coded for using the
/// Morphology class, which is English-only
/// </summary>
public virtual IList <CoreLabel> Lemmatize <_T0>(IList <_T0> tokens)
where _T0 : IHasWord
{
IList <TaggedWord> tagged;
if (GetOp().testOptions.preTag)
{
IFunction <IList <IHasWord>, IList <TaggedWord> > tagger = LoadTagger();
tagged = tagger.Apply(tokens);
}
else
{
Tree tree = Parse(tokens);
tagged = tree.TaggedYield();
}
Morphology morpha = new Morphology();
IList <CoreLabel> lemmas = Generics.NewArrayList();
foreach (TaggedWord token in tagged)
{
CoreLabel label = new CoreLabel();
label.SetWord(token.Word());
label.SetTag(token.Tag());
morpha.Stem(label);
lemmas.Add(label);
}
return(lemmas);
}
public UnnamedDependency(string regent, string dependent)
{
// We store the text of the labels separately because it looks like
// it is possible for an object to request a hash code using itself
// in a partially reconstructed state when unserializing. For
// example, a TreeGraphNode might ask for the hash code of an
// UnnamedDependency, which then uses an unfilled member of the same
// TreeGraphNode to get the hash code. Keeping the text of the
// labels breaks that possible cycle.
if (regent == null || dependent == null)
{
throw new ArgumentException("governor or dependent cannot be null");
}
CoreLabel headLabel = new CoreLabel();
headLabel.SetValue(regent);
headLabel.SetWord(regent);
this.regent = headLabel;
CoreLabel depLabel = new CoreLabel();
depLabel.SetValue(dependent);
depLabel.SetWord(dependent);
this.dependent = depLabel;
regentText = regent;
dependentText = dependent;
}
/// <summary>
/// Loops back through all the datums inserted for the most recent word
/// and inserts statistics about the word they are a part of.
/// </summary>
/// <remarks>
/// Loops back through all the datums inserted for the most recent word
/// and inserts statistics about the word they are a part of. This needs to
/// be post hoc because the CoreLabel lists coming from testing data sets
/// are pre-segmented (so treating each of those CoreLabels as a "word" lets
/// us cheat and get 100% classification accuracy by just looking at whether
/// we're at the beginning of a "word").
/// </remarks>
/// <param name="iobList"/>
/// <param name="currentWord"/>
/// <param name="wordStartIndex"/>
private static void FillInWordStatistics(IList <CoreLabel> iobList, string currentWord, int wordStartIndex)
{
for (int j = wordStartIndex; j < iobList.Count; j++)
{
CoreLabel tok = iobList[j];
tok.SetIndex(j - wordStartIndex);
tok.SetWord(currentWord);
}
}
private CoreLabel MkLabel(string word, string ner)
{
CoreLabel label = new CoreLabel();
label.SetWord(word);
label.SetOriginalText(word);
label.SetNER(ner);
return(label);
}
private static CoreLabel InitCoreLabel(string token)
{
CoreLabel label = new CoreLabel();
label.SetWord(token);
label.SetValue(token);
label.Set(typeof(CoreAnnotations.TextAnnotation), token);
label.Set(typeof(CoreAnnotations.ValueAnnotation), token);
return(label);
}
/// <summary>Copies the CoreLabel cl with the new word part</summary>
private static CoreLabel CopyCoreLabel(CoreLabel cl, string part, int beginPosition, int endPosition)
{
CoreLabel newLabel = new CoreLabel(cl);
newLabel.SetWord(part);
newLabel.SetValue(part);
newLabel.SetBeginPosition(beginPosition);
newLabel.SetEndPosition(endPosition);
newLabel.Set(typeof(CoreAnnotations.OriginalTextAnnotation), part);
return(newLabel);
}
protected internal virtual CoreLabel MkWord(string gloss, int index)
{
CoreLabel w = new CoreLabel();
w.SetWord(gloss);
w.SetValue(gloss);
if (index >= 0)
{
w.SetIndex(index);
}
return(w);
}
/// <summary>Create a dummy word, just with a given word at a given index.</summary>
/// <remarks>
/// Create a dummy word, just with a given word at a given index.
/// Mostly useful for making semantic graphs.
/// </remarks>
public static CoreLabel MkWord(string gloss, int index)
{
CoreLabel w = new CoreLabel();
w.SetWord(gloss);
w.SetValue(gloss);
if (index >= 0)
{
w.SetIndex(index);
}
return(w);
}
// Arbitrary test input. We just need to segment something on multiple threads to reproduce
// the issue
private static IList <CoreLabel> CreateTestTokens()
{
CoreLabel token = new CoreLabel();
token.SetWord("ä½ å¥½ï¼Œä¸–ç•Œ");
token.SetValue("ä½ å¥½ï¼Œä¸–ç•Œ");
token.Set(typeof(CoreAnnotations.ChineseSegAnnotation), "1");
token.Set(typeof(CoreAnnotations.AnswerAnnotation), "0");
IList <CoreLabel> labels = new List <CoreLabel>();
labels.Add(token);
return(labels);
}
public static State InitialStateFromTaggedSentence <_T0>(IList <_T0> words)
where _T0 : IHasWord
{
IList <Tree> preterminals = Generics.NewArrayList();
for (int index = 0; index < words.Count; ++index)
{
IHasWord hw = words[index];
CoreLabel wordLabel;
string tag;
if (hw is CoreLabel)
{
wordLabel = (CoreLabel)hw;
tag = wordLabel.Tag();
}
else
{
wordLabel = new CoreLabel();
wordLabel.SetValue(hw.Word());
wordLabel.SetWord(hw.Word());
if (!(hw is IHasTag))
{
throw new ArgumentException("Expected tagged words");
}
tag = ((IHasTag)hw).Tag();
wordLabel.SetTag(tag);
}
if (tag == null)
{
throw new ArgumentException("Input word not tagged");
}
CoreLabel tagLabel = new CoreLabel();
tagLabel.SetValue(tag);
// Index from 1. Tools downstream from the parser expect that
// Internally this parser uses the index, so we have to
// overwrite incorrect indices if the label is already indexed
wordLabel.SetIndex(index + 1);
tagLabel.SetIndex(index + 1);
LabeledScoredTreeNode wordNode = new LabeledScoredTreeNode(wordLabel);
LabeledScoredTreeNode tagNode = new LabeledScoredTreeNode(tagLabel);
tagNode.AddChild(wordNode);
// TODO: can we get away with not setting these on the wordLabel?
wordLabel.Set(typeof(TreeCoreAnnotations.HeadWordLabelAnnotation), wordLabel);
wordLabel.Set(typeof(TreeCoreAnnotations.HeadTagLabelAnnotation), tagLabel);
tagLabel.Set(typeof(TreeCoreAnnotations.HeadWordLabelAnnotation), wordLabel);
tagLabel.Set(typeof(TreeCoreAnnotations.HeadTagLabelAnnotation), tagLabel);
preterminals.Add(tagNode);
}
return(new State(preterminals));
}
/// <summary>Splits a compound marked by the lexer.</summary>
private CoreLabel ProcessCompound(CoreLabel cl)
{
cl.Remove(typeof(CoreAnnotations.ParentAnnotation));
string[] parts = cl.Word().ReplaceAll("-", " - ").Split("\\s+");
foreach (string part in parts)
{
CoreLabel newLabel = new CoreLabel(cl);
newLabel.SetWord(part);
newLabel.SetValue(part);
newLabel.Set(typeof(CoreAnnotations.OriginalTextAnnotation), part);
compoundBuffer.Add(newLabel);
}
return(compoundBuffer.Remove(0));
}
public virtual void TestCoreLabelSetWordBehavior()
{
CoreLabel foo = new CoreLabel();
foo.Set(typeof(CoreAnnotations.TextAnnotation), "foo");
foo.Set(typeof(CoreAnnotations.PartOfSpeechAnnotation), "B");
foo.Set(typeof(CoreAnnotations.LemmaAnnotation), "fool");
// Lemma gets removed with word
ArrayCoreMap copy = new ArrayCoreMap(foo);
NUnit.Framework.Assert.AreEqual(copy, foo);
foo.SetWord("foo");
NUnit.Framework.Assert.AreEqual(copy, foo);
// same word set
foo.SetWord("bar");
NUnit.Framework.Assert.IsFalse(copy.Equals(foo));
// lemma removed
foo.SetWord("foo");
NUnit.Framework.Assert.IsFalse(copy.Equals(foo));
// still removed
foo.Set(typeof(CoreAnnotations.LemmaAnnotation), "fool");
NUnit.Framework.Assert.AreEqual(copy, foo);
// back to normal
// Hash code is consistent
int hashCode = foo.GetHashCode();
NUnit.Framework.Assert.AreEqual(copy.GetHashCode(), hashCode);
foo.SetWord("bar");
NUnit.Framework.Assert.IsFalse(hashCode == foo.GetHashCode());
foo.SetWord("foo");
NUnit.Framework.Assert.IsFalse(hashCode == foo.GetHashCode());
// Hash code doesn't care between a value of null and the key not existing
NUnit.Framework.Assert.IsTrue(foo.Lemma() == null);
int lemmalessHashCode = foo.GetHashCode();
foo.Remove(typeof(CoreAnnotations.LemmaAnnotation));
NUnit.Framework.Assert.AreEqual(lemmalessHashCode, foo.GetHashCode());
foo.SetLemma(null);
NUnit.Framework.Assert.AreEqual(lemmalessHashCode, foo.GetHashCode());
foo.SetLemma("fool");
NUnit.Framework.Assert.AreEqual(hashCode, foo.GetHashCode());
// Check equals
foo.SetWord("bar");
foo.SetWord("foo");
ArrayCoreMap nulledCopy = new ArrayCoreMap(foo);
NUnit.Framework.Assert.AreEqual(nulledCopy, foo);
foo.Remove(typeof(CoreAnnotations.LemmaAnnotation));
NUnit.Framework.Assert.AreEqual(nulledCopy, foo);
}
public virtual void SetUp()
{
lock (typeof(RegexNERSequenceClassifierTest))
{
if (tempFile == null)
{
tempFile = File.CreateTempFile("regexnertest.patterns", "txt");
FileWriter fout = new FileWriter(tempFile);
BufferedWriter bout = new BufferedWriter(fout);
bout.Write("sausage\tfood\n");
bout.Write("(avocet|curlew)(s?)\tshorebird\n");
bout.Write("shoreline park\tpark\n");
bout.Flush();
fout.Close();
}
}
sentences = new List <IList <CoreLabel> >();
NERsentences = new List <IList <CoreLabel> >();
NUnit.Framework.Assert.AreEqual(words.Length, tags.Length);
NUnit.Framework.Assert.AreEqual(words.Length, ner.Length);
for (int snum = 0; snum < words.Length; ++snum)
{
string[] wordPieces = words[snum].Split(" ");
string[] tagPieces = tags[snum].Split(" ");
string[] nerPieces = ner[snum].Split(" ");
NUnit.Framework.Assert.AreEqual(wordPieces.Length, tagPieces.Length);
NUnit.Framework.Assert.AreEqual(wordPieces.Length, nerPieces.Length, "Input " + snum + " " + words[snum] + " of different length than " + ner[snum]);
IList <CoreLabel> sentence = new List <CoreLabel>();
IList <CoreLabel> NERsentence = new List <CoreLabel>();
for (int wnum = 0; wnum < wordPieces.Length; ++wnum)
{
CoreLabel token = new CoreLabel();
token.SetWord(wordPieces[wnum]);
token.SetTag(tagPieces[wnum]);
sentence.Add(token);
CoreLabel NERtoken = new CoreLabel();
NERtoken.SetWord(wordPieces[wnum]);
NERtoken.SetTag(tagPieces[wnum]);
NERtoken.SetNER(nerPieces[wnum]);
NERsentence.Add(NERtoken);
}
sentences.Add(sentence);
NERsentences.Add(NERsentence);
}
}
/// <summary>
/// Convert a String to a list of characters suitable for labeling in an IOB
/// segmentation model.
/// </summary>
/// <param name="tokenList"/>
/// <param name="segMarker"/>
/// <param name="applyRewriteRules">add rewrite labels (for training data)</param>
/// <param name="stripRewrites">
/// revert training data to old Green and DeNero model (remove
/// rewrite labels but still rewrite to try to preserve raw text)
/// </param>
/// <param name="tf">a TokenizerFactory returning ArabicTokenizers (for determining original segment boundaries)</param>
/// <param name="origText">the original string before tokenization (for determining original segment boundaries)</param>
public static IList <CoreLabel> StringToIOB(IList <CoreLabel> tokenList, char segMarker, bool applyRewriteRules, bool stripRewrites, ITokenizerFactory <CoreLabel> tf, string origText)
{
IList <CoreLabel> iobList = new List <CoreLabel>(tokenList.Count * 7 + tokenList.Count);
string strSegMarker = segMarker.ToString();
bool addWhitespace = false;
int numTokens = tokenList.Count;
string lastToken = string.Empty;
string currentWord = string.Empty;
int wordStartIndex = 0;
foreach (CoreLabel cl in tokenList)
{
// What type of token is this
if (addWhitespace)
{
FillInWordStatistics(iobList, currentWord, wordStartIndex);
currentWord = string.Empty;
wordStartIndex = iobList.Count + 1;
iobList.Add(CreateDatum(cl, BoundaryChar, BoundarySymbol));
CoreLabel boundaryDatum = iobList[iobList.Count - 1];
boundaryDatum.SetIndex(0);
boundaryDatum.SetWord(string.Empty);
addWhitespace = false;
}
string token = cl.Word();
IOBUtils.TokenType tokType = GetTokenType(token, strSegMarker);
token = StripSegmentationMarkers(token, tokType);
System.Diagnostics.Debug.Assert(token.Length != 0);
if (ShouldNotSegment(token))
{
iobList.Add(CreateDatum(cl, token, NosegSymbol));
addWhitespace = true;
}
else
{
// Iterate over the characters in the token
TokenToDatums(iobList, cl, token, tokType, cl, lastToken, applyRewriteRules, stripRewrites, tf, origText);
addWhitespace = (tokType == IOBUtils.TokenType.BeginMarker || tokType == IOBUtils.TokenType.NoMarker);
}
currentWord += token;
lastToken = token;
}
FillInWordStatistics(iobList, currentWord, wordStartIndex);
return(iobList);
}
/// <summary>Splits a compound marked by the lexer.</summary>
private CoreLabel ProcessCompound(CoreLabel cl)
{
cl.Remove(typeof(CoreAnnotations.ParentAnnotation));
string[] parts = pSpace.Split(pDash.Matcher(cl.Word()).ReplaceAll(" - "));
int lengthAccum = 0;
foreach (string part in parts)
{
CoreLabel newLabel = new CoreLabel(cl);
newLabel.SetWord(part);
newLabel.SetValue(part);
newLabel.SetBeginPosition(cl.BeginPosition() + lengthAccum);
newLabel.SetEndPosition(cl.BeginPosition() + lengthAccum + part.Length);
newLabel.Set(typeof(CoreAnnotations.OriginalTextAnnotation), part);
compoundBuffer.Add(newLabel);
lengthAccum += part.Length;
}
return(compoundBuffer.Remove(0));
}
public virtual IList <CoreLabel> SegmentStringToTokenList(string line)
{
IList <CoreLabel> tokenList = CollectionUtils.MakeList();
IList <CoreLabel> labeledSequence = SegmentStringToIOB(line);
foreach (IntPair span in IOBUtils.TokenSpansForIOB(labeledSequence))
{
CoreLabel token = new CoreLabel();
string text = IOBUtils.IOBToString(labeledSequence, prefixMarker, suffixMarker, span.GetSource(), span.GetTarget());
token.SetWord(text);
token.SetValue(text);
token.Set(typeof(CoreAnnotations.TextAnnotation), text);
token.Set(typeof(CoreAnnotations.ArabicSegAnnotation), "1");
int start = labeledSequence[span.GetSource()].BeginPosition();
int end = labeledSequence[span.GetTarget() - 1].EndPosition();
token.SetOriginalText(Sharpen.Runtime.Substring(line, start, end));
token.Set(typeof(CoreAnnotations.CharacterOffsetBeginAnnotation), start);
token.Set(typeof(CoreAnnotations.CharacterOffsetEndAnnotation), end);
tokenList.Add(token);
}
return(tokenList);
}
public UnnamedDependency(string regent, string dependent)
{
if (regent == null || dependent == null)
{
throw new ArgumentException("governor or dependent cannot be null");
}
var headLabel = new CoreLabel();
headLabel.SetValue(regent);
headLabel.SetWord(regent);
this._regent = headLabel;
var depLabel = new CoreLabel();
depLabel.SetValue(dependent);
depLabel.SetWord(dependent);
this._dependent = depLabel;
RegentText = regent;
DependentText = dependent;
}
public override ILabel Label()
{
// TODO: move this CoreLabel construction logic somewhere appropriate
var cLabel = new CoreLabel();
if (this.parse.IsLeaf)
{
cLabel.SetWord(this.parse.Value);
cLabel.SetBeginPosition(this.parse.Span.Start);
cLabel.SetEndPosition(this.parse.Span.End);
cLabel.SetValue(this.parse.Value);
}
else
{
cLabel.SetCategory(this.parse.Type);
cLabel.SetValue(this.parse.Type);
if (this.Depth() == 1)
{
cLabel.SetTag(this.parse.Type);
}
}
return cLabel;
}
public override ILabel Label()
{
// TODO: move this CoreLabel construction logic somewhere appropriate
var cLabel = new CoreLabel();
if (this.parse.IsLeaf)
{
cLabel.SetWord(this.parse.Value);
cLabel.SetBeginPosition(this.parse.Span.Start);
cLabel.SetEndPosition(this.parse.Span.End);
cLabel.SetValue(this.parse.Value);
}
else
{
cLabel.SetCategory(this.parse.Type);
cLabel.SetValue(this.parse.Type);
if (this.Depth() == 1)
{
cLabel.SetTag(this.parse.Type);
}
}
return(cLabel);
}
public override Tree NormalizeWholeTree(Tree tree, ITreeFactory tf)
{
tree = tree.Prune(emptyFilter, tf).SpliceOut(aOverAFilter, tf);
foreach (Tree t in tree)
{
if (t.IsLeaf())
{
//Strip off morphological analyses and place them in the OriginalTextAnnotation, which is
//specified by HasContext.
if (t.Value().Contains(MorphoFeatureSpecification.MorphoMark))
{
string[] toks = t.Value().Split(MorphoFeatureSpecification.MorphoMark);
if (toks.Length != 2)
{
log.Err(string.Format("%s: Word contains malformed morph annotation: %s", this.GetType().FullName, t.Value()));
}
else
{
if (t.Label() is CoreLabel)
{
CoreLabel cl = (CoreLabel)t.Label();
cl.SetValue(string.Intern(toks[0].Trim()));
cl.SetWord(string.Intern(toks[0].Trim()));
Pair <string, string> lemmaMorph = MorphoFeatureSpecification.SplitMorphString(toks[0], toks[1]);
string lemma = lemmaMorph.First();
string morphAnalysis = lemmaMorph.Second();
if (lemma.Equals(toks[0]))
{
cl.SetOriginalText(string.Intern(toks[1].Trim()));
}
else
{
// TODO(spenceg): Does this help?
string newLemma = lexMapper.Map(null, lemma);
if (newLemma == null || newLemma.Trim().IsEmpty())
{
newLemma = lemma;
}
string newMorphAnalysis = newLemma + MorphoFeatureSpecification.LemmaMark + morphAnalysis;
cl.SetOriginalText(string.Intern(newMorphAnalysis));
}
}
else
{
log.Error(string.Format("%s: Cannot store morph analysis in non-CoreLabel: %s", this.GetType().FullName, t.Label().GetType().FullName));
}
}
}
}
else
{
if (t.IsPreTerminal())
{
if (t.Value() == null || t.Value().IsEmpty())
{
log.Warn(string.Format("%s: missing tag for %s", this.GetType().FullName, t.PennString()));
}
else
{
if (t.Label() is IHasTag)
{
((IHasTag)t.Label()).SetTag(t.Value());
}
}
}
else
{
//Phrasal nodes
// there are some nodes "/" missing preterminals. We'll splice in a tag for these.
int nk = t.NumChildren();
IList <Tree> newKids = new List <Tree>(nk);
for (int j = 0; j < nk; j++)
{
Tree child = t.GetChild(j);
if (child.IsLeaf())
{
log.Warn(string.Format("%s: Splicing in DUMMYTAG for %s", this.GetType().FullName, t.ToString()));
newKids.Add(tf.NewTreeNode("DUMMYTAG", Java.Util.Collections.SingletonList(child)));
}
else
{
newKids.Add(child);
}
}
t.SetChildren(newKids);
}
}
}
//Every node in the tree has now been processed
//
// Additional processing for specific phrasal annotations
//
// special global coding for moving PRD annotation from constituent to verb tag.
if (markPRDverb)
{
TregexMatcher m = prdVerbPattern.Matcher(tree);
Tree match = null;
while (m.Find())
{
if (m.GetMatch() != match)
{
match = m.GetMatch();
match.Label().SetValue(match.Label().Value() + "-PRDverb");
Tree prd = m.GetNode("prd");
prd.Label().SetValue(base.NormalizeNonterminal(prd.Label().Value()));
}
}
}
//Mark *only* subjects in verb-initial clauses
if (retainNPSbj)
{
TregexMatcher m = npSbjPattern.Matcher(tree);
while (m.Find())
{
Tree match = m.GetMatch();
match.Label().SetValue("NP");
}
}
if (tree.IsPreTerminal())
{
// The whole tree is a bare tag: bad!
string val = tree.Label().Value();
if (val.Equals("CC") || val.StartsWith("PUNC") || val.Equals("CONJ"))
{
log.Warn(string.Format("%s: Bare tagged word being wrapped in FRAG %s", this.GetType().FullName, tree.PennString()));
tree = tf.NewTreeNode("FRAG", Java.Util.Collections.SingletonList(tree));
}
else
{
log.Warn(string.Format("%s: Bare tagged word %s", this.GetType().FullName, tree.PennString()));
}
}
//Add start symbol so that the root has only one sub-state. Escape any enclosing brackets.
//If the "tree" consists entirely of enclosing brackets e.g. ((())) then this method
//will return null. In this case, readers e.g. PennTreeReader will try to read the next tree.
while (tree != null && (tree.Value() == null || tree.Value().IsEmpty()) && tree.NumChildren() <= 1)
{
tree = tree.FirstChild();
}
if (tree != null && !tree.Value().Equals(rootLabel))
{
tree = tf.NewTreeNode(rootLabel, Java.Util.Collections.SingletonList(tree));
}
return(tree);
}
public static void MungeLeaves(Tree tree, bool lemmasAsLeaves, bool addMorphoToLeaves)
{
IList <ILabel> labels = tree.Yield();
foreach (ILabel label in labels)
{
++nTokens;
if (!(label is CoreLabel))
{
throw new ArgumentException("Only works with CoreLabels trees");
}
CoreLabel coreLabel = (CoreLabel)label;
string lemma = coreLabel.Lemma();
//PTB escaping since we're going to put this in the leaf
if (lemma == null)
{
// No lemma, so just add the surface form
lemma = coreLabel.Word();
}
else
{
if (lemma.Equals("("))
{
lemma = "-LRB-";
}
else
{
if (lemma.Equals(")"))
{
lemma = "-RRB-";
}
}
}
if (lemmasAsLeaves)
{
string escapedLemma = lemma;
coreLabel.SetWord(escapedLemma);
coreLabel.SetValue(escapedLemma);
coreLabel.SetLemma(lemma);
}
if (addMorphoToLeaves)
{
string morphStr = coreLabel.OriginalText();
if (morphStr == null || morphStr.Equals(string.Empty))
{
morphStr = MorphoFeatureSpecification.NoAnalysis;
}
else
{
++nMorphAnalyses;
}
// Normalize punctuation analyses
if (morphStr.StartsWith("PONCT"))
{
morphStr = "PUNC";
}
string newLeaf = string.Format("%s%s%s%s%s", coreLabel.Value(), MorphoFeatureSpecification.MorphoMark, lemma, MorphoFeatureSpecification.LemmaMark, morphStr);
coreLabel.SetValue(newLeaf);
coreLabel.SetWord(newLeaf);
}
}
}
/// <summary>Create an Annotation object (with a single sentence) from the given specification.</summary>
private static Annotation ParseSentence(Optional <string> docid, Optional <int> sentenceIndex, string gloss, Func <IList <CoreLabel>, SemanticGraph> tree, Func <IList <CoreLabel>, SemanticGraph> maltTree, IList <string> words, IList <string
> lemmas, IList <string> pos, IList <string> ner, Optional <string> sentenceid)
{
// Error checks
if (lemmas.Count != words.Count)
{
throw new ArgumentException("Array lengths don't match: " + words.Count + " vs " + lemmas.Count + " (sentence " + sentenceid.OrElse("???") + ")");
}
if (pos.Count != words.Count)
{
throw new ArgumentException("Array lengths don't match: " + words.Count + " vs " + pos.Count + " (sentence " + sentenceid.OrElse("???") + ")");
}
if (ner.Count != words.Count)
{
throw new ArgumentException("Array lengths don't match: " + words.Count + " vs " + ner.Count + " (sentence " + sentenceid.OrElse("???") + ")");
}
// Create structure
IList <CoreLabel> tokens = new List <CoreLabel>(words.Count);
int beginChar = 0;
for (int i = 0; i < words.Count; ++i)
{
CoreLabel token = new CoreLabel(12);
token.SetWord(words[i]);
token.SetValue(words[i]);
token.SetBeginPosition(beginChar);
token.SetEndPosition(beginChar + words[i].Length);
beginChar += words[i].Length + 1;
token.SetLemma(lemmas[i]);
token.SetTag(pos[i]);
token.SetNER(ner[i]);
token.Set(typeof(CoreAnnotations.DocIDAnnotation), docid.OrElse("???"));
token.Set(typeof(CoreAnnotations.SentenceIndexAnnotation), sentenceIndex.OrElse(-1));
token.Set(typeof(CoreAnnotations.IndexAnnotation), i + 1);
token.Set(typeof(CoreAnnotations.TokenBeginAnnotation), i);
token.Set(typeof(CoreAnnotations.TokenEndAnnotation), i + 1);
tokens.Add(token);
}
gloss = gloss.Replace("\\n", "\n").Replace("\\t", "\t");
ICoreMap sentence = new ArrayCoreMap(16);
sentence.Set(typeof(CoreAnnotations.TokensAnnotation), tokens);
SemanticGraph graph = tree.Apply(tokens);
sentence.Set(typeof(SemanticGraphCoreAnnotations.BasicDependenciesAnnotation), graph);
sentence.Set(typeof(SemanticGraphCoreAnnotations.CollapsedDependenciesAnnotation), graph);
sentence.Set(typeof(SemanticGraphCoreAnnotations.CollapsedCCProcessedDependenciesAnnotation), graph);
SemanticGraph maltGraph = maltTree.Apply(tokens);
sentence.Set(typeof(SemanticGraphCoreAnnotations.AlternativeDependenciesAnnotation), maltGraph);
sentence.Set(typeof(CoreAnnotations.DocIDAnnotation), docid.OrElse("???"));
sentence.Set(typeof(CoreAnnotations.SentenceIndexAnnotation), sentenceIndex.OrElse(-1));
sentence.Set(typeof(CoreAnnotations.TextAnnotation), gloss);
sentence.Set(typeof(CoreAnnotations.TokenBeginAnnotation), 0);
sentence.Set(typeof(CoreAnnotations.TokenEndAnnotation), tokens.Count);
Annotation doc = new Annotation(gloss);
doc.Set(typeof(CoreAnnotations.TokensAnnotation), tokens);
doc.Set(typeof(CoreAnnotations.SentencesAnnotation), Java.Util.Collections.SingletonList(sentence));
doc.Set(typeof(CoreAnnotations.DocIDAnnotation), docid.OrElse("???"));
doc.Set(typeof(CoreAnnotations.SentenceIndexAnnotation), sentenceIndex.OrElse(-1));
return(doc);
}
/// <exception cref="System.IO.IOException"/>
public static IList <ICoreMap> ParseFile(BufferedReader reader, ICollection <string> categoriesAllowed, IDictionary <string, Type> setClassForTheseLabels, bool setGoldClass, string sentIDprefix)
{
Pattern startingLabelToken = Pattern.Compile("<(" + StringUtils.Join(categoriesAllowed, "|") + ")>");
Pattern endLabelToken = Pattern.Compile("</(" + StringUtils.Join(categoriesAllowed, "|") + ")>");
string backgroundSymbol = "O";
IList <ICoreMap> sentences = new List <ICoreMap>();
int lineNum = -1;
string l = null;
while ((l = reader.ReadLine()) != null)
{
lineNum++;
string[] t = l.Split("\t", 2);
string id = null;
string text = null;
if (t.Length == 2)
{
id = t[0];
text = t[1];
}
else
{
if (t.Length == 1)
{
text = t[0];
id = lineNum.ToString();
}
}
id = sentIDprefix + id;
DocumentPreprocessor dp = new DocumentPreprocessor(new StringReader(text));
PTBTokenizer.PTBTokenizerFactory <CoreLabel> tokenizerFactory = PTBTokenizer.PTBTokenizerFactory.NewCoreLabelTokenizerFactory("ptb3Escaping=false,normalizeParentheses=false,escapeForwardSlashAsterisk=false");
dp.SetTokenizerFactory(tokenizerFactory);
string label = backgroundSymbol;
int sentNum = -1;
foreach (IList <IHasWord> sentence in dp)
{
sentNum++;
string sentStr = string.Empty;
IList <CoreLabel> sent = new List <CoreLabel>();
foreach (IHasWord tokw in sentence)
{
string tok = tokw.Word();
Matcher startingMatcher = startingLabelToken.Matcher(tok);
Matcher endMatcher = endLabelToken.Matcher(tok);
if (startingMatcher.Matches())
{
//System.out.println("matched starting");
label = startingMatcher.Group(1);
}
else
{
if (endMatcher.Matches())
{
//System.out.println("matched end");
label = backgroundSymbol;
}
else
{
CoreLabel c = new CoreLabel();
IList <string> toks = new List <string>();
toks.Add(tok);
foreach (string toksplit in toks)
{
sentStr += " " + toksplit;
c.SetWord(toksplit);
c.SetLemma(toksplit);
c.SetValue(toksplit);
c.Set(typeof(CoreAnnotations.TextAnnotation), toksplit);
c.Set(typeof(CoreAnnotations.OriginalTextAnnotation), tok);
if (setGoldClass)
{
c.Set(typeof(CoreAnnotations.GoldAnswerAnnotation), label);
}
if (setClassForTheseLabels != null && setClassForTheseLabels.Contains(label))
{
c.Set(setClassForTheseLabels[label], label);
}
sent.Add(c);
}
}
}
}
ICoreMap sentcm = new ArrayCoreMap();
sentcm.Set(typeof(CoreAnnotations.TextAnnotation), sentStr.Trim());
sentcm.Set(typeof(CoreAnnotations.TokensAnnotation), sent);
sentcm.Set(typeof(CoreAnnotations.DocIDAnnotation), id + "-" + sentNum);
sentences.Add(sentcm);
}
}
return(sentences);
}
/// <summary>
/// Reads in a single ACE*.apf.xml file and convert it to RelationSentence
/// objects.
/// </summary>
/// <remarks>
/// Reads in a single ACE*.apf.xml file and convert it to RelationSentence
/// objects. However, you probably should call parse() instead.
/// </remarks>
/// <param name="prefix">
/// prefix of ACE filename to read (e.g.
/// "/u/mcclosky/scr/data/ACE2005/english_test/bc/CNN_CF_20030827.1630.01"
/// ) (no ".apf.xml" extension)
/// </param>
/// <returns>list of RelationSentence objects</returns>
/// <exception cref="System.IO.IOException"/>
/// <exception cref="Org.Xml.Sax.SAXException"/>
/// <exception cref="Javax.Xml.Parsers.ParserConfigurationException"/>
private IList <ICoreMap> ReadDocument(string prefix, Annotation corpus)
{
logger.Info("Reading document: " + prefix);
IList <ICoreMap> results = new List <ICoreMap>();
AceDocument aceDocument;
if (aceVersion.Equals("ACE2004"))
{
aceDocument = AceDocument.ParseDocument(prefix, false, aceVersion);
}
else
{
aceDocument = AceDocument.ParseDocument(prefix, false);
}
string docId = aceDocument.GetId();
// map entity mention ID strings to their EntityMention counterparts
IDictionary <string, EntityMention> entityMentionMap = Generics.NewHashMap();
/*
* for (int sentenceIndex = 0; sentenceIndex < aceDocument.getSentenceCount(); sentenceIndex++) {
* List<AceToken> tokens = aceDocument.getSentence(sentenceIndex);
* StringBuffer b = new StringBuffer();
* for(AceToken t: tokens) b.append(t.getLiteral() + " " );
* logger.info("SENTENCE: " + b.toString());
* }
*/
int tokenOffset = 0;
for (int sentenceIndex = 0; sentenceIndex < aceDocument.GetSentenceCount(); sentenceIndex++)
{
IList <AceToken> tokens = aceDocument.GetSentence(sentenceIndex);
IList <CoreLabel> words = new List <CoreLabel>();
StringBuilder textContent = new StringBuilder();
for (int i = 0; i < tokens.Count; i++)
{
CoreLabel l = new CoreLabel();
l.SetWord(tokens[i].GetLiteral());
l.Set(typeof(CoreAnnotations.ValueAnnotation), l.Word());
l.Set(typeof(CoreAnnotations.CharacterOffsetBeginAnnotation), tokens[i].GetByteStart());
l.Set(typeof(CoreAnnotations.CharacterOffsetEndAnnotation), tokens[i].GetByteEnd());
words.Add(l);
if (i > 0)
{
textContent.Append(" ");
}
textContent.Append(tokens[i].GetLiteral());
}
// skip "sentences" that are really just SGML tags (which come from using the RobustTokenizer)
if (words.Count == 1)
{
string word = words[0].Word();
if (word.StartsWith("<") && word.EndsWith(">"))
{
tokenOffset += tokens.Count;
continue;
}
}
ICoreMap sentence = new Annotation(textContent.ToString());
sentence.Set(typeof(CoreAnnotations.DocIDAnnotation), docId);
sentence.Set(typeof(CoreAnnotations.TokensAnnotation), words);
logger.Info("Reading sentence: \"" + textContent + "\"");
IList <AceEntityMention> entityMentions = aceDocument.GetEntityMentions(sentenceIndex);
IList <AceRelationMention> relationMentions = aceDocument.GetRelationMentions(sentenceIndex);
IList <AceEventMention> eventMentions = aceDocument.GetEventMentions(sentenceIndex);
// convert entity mentions
foreach (AceEntityMention aceEntityMention in entityMentions)
{
string corefID = string.Empty;
foreach (string entityID in aceDocument.GetKeySetEntities())
{
AceEntity e = aceDocument.GetEntity(entityID);
if (e.GetMentions().Contains(aceEntityMention))
{
corefID = entityID;
break;
}
}
EntityMention convertedMention = ConvertAceEntityMention(aceEntityMention, docId, sentence, tokenOffset, corefID);
// EntityMention convertedMention = convertAceEntityMention(aceEntityMention, docId, sentence, tokenOffset);
entityCounts.IncrementCount(convertedMention.GetType());
logger.Info("CONVERTED MENTION HEAD SPAN: " + convertedMention.GetHead());
logger.Info("CONVERTED ENTITY MENTION: " + convertedMention);
AnnotationUtils.AddEntityMention(sentence, convertedMention);
entityMentionMap[aceEntityMention.GetId()] = convertedMention;
}
// TODO: make Entity objects as needed
// convert relation mentions
foreach (AceRelationMention aceRelationMention in relationMentions)
{
RelationMention convertedMention = ConvertAceRelationMention(aceRelationMention, docId, sentence, entityMentionMap);
if (convertedMention != null)
{
relationCounts.IncrementCount(convertedMention.GetType());
logger.Info("CONVERTED RELATION MENTION: " + convertedMention);
AnnotationUtils.AddRelationMention(sentence, convertedMention);
}
}
// TODO: make Relation objects
// convert EventMentions
foreach (AceEventMention aceEventMention in eventMentions)
{
EventMention convertedMention = ConvertAceEventMention(aceEventMention, docId, sentence, entityMentionMap, tokenOffset);
if (convertedMention != null)
{
eventCounts.IncrementCount(convertedMention.GetType());
logger.Info("CONVERTED EVENT MENTION: " + convertedMention);
AnnotationUtils.AddEventMention(sentence, convertedMention);
}
}
// TODO: make Event objects
results.Add(sentence);
tokenOffset += tokens.Count;
}
return(results);
}
private Annotation ReadSentence(string docId, IEnumerator <string> lineIterator)
{
Annotation sentence = new Annotation(string.Empty);
sentence.Set(typeof(CoreAnnotations.DocIDAnnotation), docId);
sentence.Set(typeof(MachineReadingAnnotations.EntityMentionsAnnotation), new List <EntityMention>());
// we'll need to set things like the tokens and textContent after we've
// fully read the sentence
// contains the full text that we've read so far
StringBuilder textContent = new StringBuilder();
int tokenCount = 0;
// how many tokens we've seen so far
IList <CoreLabel> tokens = new List <CoreLabel>();
// when we've seen two blank lines in a row, this sentence is over (one
// blank line separates the sentence and the relations
int numBlankLinesSeen = 0;
string sentenceID = null;
// keeps tracks of entities we've seen so far for use by relations
IDictionary <string, EntityMention> indexToEntityMention = new Dictionary <string, EntityMention>();
while (lineIterator.MoveNext() && numBlankLinesSeen < 2)
{
string currentLine = lineIterator.Current;
currentLine = currentLine.Replace("COMMA", ",");
IList <string> pieces = StringUtils.Split(currentLine);
string identifier;
int size = pieces.Count;
switch (size)
{
case 1:
{
// blank line between sentences or relations
numBlankLinesSeen++;
break;
}
case 3:
{
// relation
string type = pieces[2];
IList <ExtractionObject> args = new List <ExtractionObject>();
EntityMention entity1 = indexToEntityMention[pieces[0]];
EntityMention entity2 = indexToEntityMention[pieces[1]];
args.Add(entity1);
args.Add(entity2);
Span span = new Span(entity1.GetExtentTokenStart(), entity2.GetExtentTokenEnd());
// identifier = "relation" + sentenceID + "-" + sentence.getAllRelations().size();
identifier = RelationMention.MakeUniqueId();
RelationMention relationMention = new RelationMention(identifier, sentence, span, type, null, args);
AnnotationUtils.AddRelationMention(sentence, relationMention);
break;
}
case 9:
{
// token
/*
* Roth token lines look like this:
*
* 19 Peop 9 O NNP/NNP Jamal/Ghosheh O O O
*/
// Entities may be multiple words joined by '/'; we split these up
IList <string> words = StringUtils.Split(pieces[5], "/");
//List<String> postags = StringUtils.split(pieces.get(4),"/");
string text = StringUtils.Join(words, " ");
identifier = "entity" + pieces[0] + '-' + pieces[2];
string nerTag = GetNormalizedNERTag(pieces[1]);
// entity type of the word/expression
if (sentenceID == null)
{
sentenceID = pieces[0];
}
if (!nerTag.Equals("O"))
{
Span extentSpan = new Span(tokenCount, tokenCount + words.Count);
// Temporarily sets the head span to equal the extent span.
// This is so the entity has a head (in particular, getValue() works) even if preprocessSentences isn't called.
// The head span is later modified if preprocessSentences is called.
EntityMention entity = new EntityMention(identifier, sentence, extentSpan, extentSpan, nerTag, null, null);
AnnotationUtils.AddEntityMention(sentence, entity);
// we can get by using these indices as strings since we only use them
// as a hash key
string index = pieces[2];
indexToEntityMention[index] = entity;
}
// int i =0;
foreach (string word in words)
{
CoreLabel label = new CoreLabel();
label.SetWord(word);
//label.setTag(postags.get(i));
label.Set(typeof(CoreAnnotations.TextAnnotation), word);
label.Set(typeof(CoreAnnotations.ValueAnnotation), word);
// we don't set TokenBeginAnnotation or TokenEndAnnotation since we're
// not keeping track of character offsets
tokens.Add(label);
}
// i++;
textContent.Append(text);
textContent.Append(' ');
tokenCount += words.Count;
break;
}
}
}
sentence.Set(typeof(CoreAnnotations.TextAnnotation), textContent.ToString());
sentence.Set(typeof(CoreAnnotations.ValueAnnotation), textContent.ToString());
sentence.Set(typeof(CoreAnnotations.TokensAnnotation), tokens);
sentence.Set(typeof(CoreAnnotations.SentenceIDAnnotation), sentenceID);
return(sentence);
}
/// <summary>Parse a sentence represented as a List of tokens.</summary>
/// <remarks>
/// Parse a sentence represented as a List of tokens.
/// The text must already have been tokenized and
/// normalized into tokens that are appropriate to the treebank
/// which was used to train the parser. The tokens can be of
/// multiple types, and the list items need not be homogeneous as to type
/// (in particular, only some words might be given tags):
/// <ul>
/// <li>If a token implements HasWord, then the word to be parsed is
/// given by its word() value.</li>
/// <li>If a token implements HasTag and the tag() value is not
/// null or the empty String, then the parser is strongly advised to assign
/// a part of speech tag that <i>begins</i> with this String.</li>
/// </ul>
/// </remarks>
/// <param name="sentence">The sentence to parse</param>
/// <returns>true Iff the sentence was accepted by the grammar</returns>
/// <exception cref="System.NotSupportedException">
/// If the Sentence is too long or
/// of zero length or the parse
/// otherwise fails for resource reasons
/// </exception>
private bool ParseInternal <_T0>(IList <_T0> sentence)
where _T0 : IHasWord
{
parseSucceeded = false;
parseNoMemory = false;
parseUnparsable = false;
parseSkipped = false;
parseFallback = false;
whatFailed = null;
addedPunct = false;
originalSentence = sentence;
int length = sentence.Count;
if (length == 0)
{
parseSkipped = true;
throw new NotSupportedException("Can't parse a zero-length sentence!");
}
IList <IHasWord> sentenceB;
if (op.wordFunction != null)
{
sentenceB = Generics.NewArrayList();
foreach (IHasWord word in originalSentence)
{
if (word is ILabel)
{
ILabel label = (ILabel)word;
ILabel newLabel = label.LabelFactory().NewLabel(label);
if (newLabel is IHasWord)
{
sentenceB.Add((IHasWord)newLabel);
}
else
{
throw new AssertionError("This should have been a HasWord");
}
}
else
{
if (word is IHasTag)
{
TaggedWord tw = new TaggedWord(word.Word(), ((IHasTag)word).Tag());
sentenceB.Add(tw);
}
else
{
sentenceB.Add(new Word(word.Word()));
}
}
}
foreach (IHasWord word_1 in sentenceB)
{
word_1.SetWord(op.wordFunction.Apply(word_1.Word()));
}
}
else
{
sentenceB = new List <IHasWord>(sentence);
}
if (op.testOptions.addMissingFinalPunctuation)
{
addedPunct = AddSentenceFinalPunctIfNeeded(sentenceB, length);
}
if (length > op.testOptions.maxLength)
{
parseSkipped = true;
throw new NotSupportedException("Sentence too long: length " + length);
}
TreePrint treePrint = GetTreePrint();
PrintWriter pwOut = op.tlpParams.Pw();
//Insert the boundary symbol
if (sentence[0] is CoreLabel)
{
CoreLabel boundary = new CoreLabel();
boundary.SetWord(LexiconConstants.Boundary);
boundary.SetValue(LexiconConstants.Boundary);
boundary.SetTag(LexiconConstants.BoundaryTag);
boundary.SetIndex(sentence.Count + 1);
//1-based indexing used in the parser
sentenceB.Add(boundary);
}
else
{
sentenceB.Add(new TaggedWord(LexiconConstants.Boundary, LexiconConstants.BoundaryTag));
}
if (Thread.Interrupted())
{
throw new RuntimeInterruptedException();
}
if (op.doPCFG)
{
if (!pparser.Parse(sentenceB))
{
return(parseSucceeded);
}
if (op.testOptions.verbose)
{
pwOut.Println("PParser output");
// getBestPCFGParse(false).pennPrint(pwOut); // with scores on nodes
treePrint.PrintTree(GetBestPCFGParse(false), pwOut);
}
}
// without scores on nodes
if (Thread.Interrupted())
{
throw new RuntimeInterruptedException();
}
if (op.doDep && !op.testOptions.useFastFactored)
{
if (!dparser.Parse(sentenceB))
{
return(parseSucceeded);
}
// cdm nov 2006: should move these printing bits to the main printing section,
// so don't calculate the best parse twice!
if (op.testOptions.verbose)
{
pwOut.Println("DParser output");
treePrint.PrintTree(dparser.GetBestParse(), pwOut);
}
}
if (Thread.Interrupted())
{
throw new RuntimeInterruptedException();
}
if (op.doPCFG && op.doDep)
{
if (!bparser.Parse(sentenceB))
{
return(parseSucceeded);
}
else
{
parseSucceeded = true;
}
}
return(true);
}
