private static AnnotationResources GetAnnotationResources()
{
var annotationResources = new AnnotationResources(_refSequencePath, _inputCachePrefix, SupplementaryAnnotationDirectories, null, _pluginDirectory, _disableRecomposition, _forceMitochondrialAnnotation);
if (SupplementaryAnnotationDirectories.Count == 0)
{
return(annotationResources);
}
using (var preloadVcfStream = GZipUtilities.GetAppropriateStream(
new PersistentStream(PersistentStreamUtils.GetReadStream(_vcfPath),
ConnectUtilities.GetFileConnectFunc(_vcfPath), 0)))
{
annotationResources.GetVariantPositions(preloadVcfStream, null);
}
return(annotationResources);
}
public void Connect_success_with_enough_retries()
{
var connector = GetMockConnector();
Assert.NotNull(ConnectUtilities.ConnectWithRetries(connector.ConnectorFunc, 0, 4));
}
public void Connect_failed_due_to_too_few_retries()
{
var connector = GetMockConnector();
Assert.Throws <IOException>(() => ConnectUtilities.ConnectWithRetries(connector.ConnectorFunc, 0, 2));
}