public override void Execute(IExecutionContext context)
{
Add(new SetSpeciesInSpeciesDependentEntityCommand(_process, _species, context));
var defaultIndividualRetriever = context.Resolve <IDefaultIndividualRetriever>();
var defaultIndividual = defaultIndividualRetriever.DefaultIndividualFor(_species);
var compoundProcessParameterMappingRepository = context.Resolve <ICompoundProcessParameterMappingRepository>();
var allProcessParametersWithDefaultValueInIndividual = _process.AllParameters()
.Where(p => compoundProcessParameterMappingRepository.HasMappedParameterFor(_process.InternalName, p.Name)).ToList();
foreach (var parameter in allProcessParametersWithDefaultValueInIndividual)
{
var objectPath = compoundProcessParameterMappingRepository.MappedParameterPathFor(_process.InternalName, parameter.Name);
var individualParameter = objectPath.Resolve <IParameter>(defaultIndividual);
Add(new SetParameterValueCommand(parameter, individualParameter.Value)
{
Visible = false
});
//Parameter updated from default individual should have the default value origin
Add(new UpdateParameterValueOriginCommand(parameter, individualParameter.ValueOrigin)
{
Visible = false
});
}
base.Execute(context);
_process = null;
_species = null;
}
private void bindProcessParameters(CompoundProcess process)
{
using (new BatchUpdate(_parametersPresenter))
{
_parametersPresenter.EditParameters(process.AllParameters());
View.AdjustParametersHeight(_parametersPresenter.OptimalHeight);
}
}
public ITransportBuilder PassiveTransportProcessFrom(CompoundProcess compoundProcess, string compoundName, IFormulaCache formulaCache)
{
var passiveProcess = _cloner.Clone(_simulationActiveProcessRepository.ProcessFor <PKSimTransport>(compoundProcess.InternalName));
passiveProcess.Name = compoundProcess.Name;
passiveProcess.ForAll = false;
passiveProcess.AddMoleculeName(compoundName);
updateTransporterFormulaFromCache(passiveProcess, formulaCache);
passiveProcess.Parameters.Where(x => !x.Formula.IsConstant()).Each(p => formulaCache.Add(p.Formula));
_parameterSetUpdater.UpdateValuesByName(compoundProcess.AllParameters(), passiveProcess.Parameters);
return(passiveProcess);
}
public TransporterMoleculeContainer ActiveTransportFrom(CompoundProcess compoundProcess, IndividualTransporter transporter, IFormulaCache formulaCache)
{
var transporterMoleculeContainer = _objectBaseFactory.Create <TransporterMoleculeContainer>().WithName(compoundProcess.InternalName);
transporterMoleculeContainer.Icon = compoundProcess.Icon;
transporterMoleculeContainer.TransportName = compoundProcess.Name;
foreach (var inducedProcess in transporter.AllInducedProcesses())
{
var activeTransporterBuilder = activeTransportFrom(compoundProcess, inducedProcess, formulaCache);
transporterMoleculeContainer.Icon = activeTransporterBuilder.Icon;
activeTransporterBuilder.TransportType = transporter.TransportType;
transporterMoleculeContainer.AddActiveTransportRealization(activeTransporterBuilder);
updateTransporterTagsFor(transporter, activeTransporterBuilder, inducedProcess);
}
_parameterContainerTask.AddProcessBuilderParametersTo(transporterMoleculeContainer);
_parameterSetUpdater.UpdateValuesByName(compoundProcess.AllParameters(), transporterMoleculeContainer.Parameters);
transporterMoleculeContainer.Name = transporter.Name;
return(transporterMoleculeContainer);
}
