public void test_L3_Compartment_initDefaults()
{
Compartment c = new Compartment(3, 1);
c.setId("A");
assertEquals(true, c.isSetId());
assertEquals(false, c.isSetName());
assertEquals(false, c.isSetSize());
assertEquals(false, c.isSetVolume());
assertEquals(false, c.isSetUnits());
assertEquals(false, c.isSetConstant());
assertEquals(false, c.isSetSpatialDimensions());
c.initDefaults();
assertTrue(("A" == c.getId()));
assertTrue(c.getName() == "");
assertTrue(("litre" == c.getUnits()));
assertTrue(c.getSpatialDimensions() == 3);
assertTrue(c.getSize() == 1);
assertTrue(c.getConstant() == true);
assertEquals(true, c.isSetId());
assertEquals(false, c.isSetName());
assertEquals(false, c.isSetSize());
assertEquals(false, c.isSetVolume());
assertEquals(true, c.isSetUnits());
assertEquals(true, c.isSetConstant());
assertEquals(true, c.isSetSpatialDimensions());
c = null;
}
public void test_L3_Compartment_createWithNS()
{
XMLNamespaces xmlns = new XMLNamespaces();
xmlns.add("http://www.sbml.org", "testsbml");
SBMLNamespaces sbmlns = new SBMLNamespaces(3, 1);
sbmlns.addNamespaces(xmlns);
Compartment c = new Compartment(sbmlns);
assertTrue(c.getTypeCode() == libsbml.SBML_COMPARTMENT);
assertTrue(c.getMetaId() == "");
assertTrue(c.getNotes() == null);
assertTrue(c.getAnnotation() == null);
assertTrue(c.getLevel() == 3);
assertTrue(c.getVersion() == 1);
assertTrue(c.getNamespaces() != null);
assertTrue(c.getNamespaces().getLength() == 2);
assertTrue(c.getId() == "");
assertTrue(c.getName() == "");
assertTrue(c.getUnits() == "");
assertTrue(c.getOutside() == "");
assertEquals(true, isnan(c.getSpatialDimensionsAsDouble()));
assertEquals(true, isnan(c.getVolume()));
assertTrue(c.getConstant() == true);
assertEquals(false, c.isSetId());
assertEquals(false, c.isSetSpatialDimensions());
assertEquals(false, c.isSetName());
assertEquals(false, c.isSetSize());
assertEquals(false, c.isSetVolume());
assertEquals(false, c.isSetUnits());
assertEquals(false, c.isSetOutside());
assertEquals(false, c.isSetConstant());
c = null;
}
/// <summary>
/// Sets the dimension of a MoBi container to the Unit of the SBML compartment.
/// </summary>
private IParameter SetDimension(Compartment compartment, IParameter sizeParameter)
{
var spatialDimensions = compartment.getSpatialDimensions();
IDimension sizeDimension;
switch (spatialDimensions)
{
case (SBMLConstants.SBML_CONTAINER_3D):
sizeDimension = !compartment.isSetUnits()
? _dimensionFactory.Dimension(Constants.Dimension.VOLUME)
: GetDimensionFromSBMLUnit(compartment.getUnits());
break;
case (SBMLConstants.SBML_CONTAINER_2D):
sizeDimension = !compartment.isSetUnits()
? _dimensionFactory.Dimension(SBMLConstants.AREA)
: GetDimensionFromSBMLUnit(compartment.getUnits());
break;
case (SBMLConstants.SBML_CONTAINER_1D):
sizeDimension = !compartment.isSetUnits()
? _dimensionFactory.Dimension(SBMLConstants.LENGTH)
: GetDimensionFromSBMLUnit(compartment.getUnits());
break;
case (SBMLConstants.SBML_CONTAINER_NO):
//no size & units allowed
return(null);
default:
sizeDimension = _dimensionFactory.Dimension(Constants.Dimension.DIMENSIONLESS);
break;
}
if (sizeDimension != null)
{
sizeParameter.Dimension = sizeDimension;
}
return(sizeParameter);
}
public void test_L3_Compartment_create()
{
assertTrue(C.getTypeCode() == libsbml.SBML_COMPARTMENT);
assertTrue(C.getMetaId() == "");
assertTrue(C.getNotes() == null);
assertTrue(C.getAnnotation() == null);
assertTrue(C.getId() == "");
assertTrue(C.getName() == "");
assertTrue(C.getUnits() == "");
assertTrue(C.getOutside() == "");
assertEquals(true, isnan(C.getSpatialDimensionsAsDouble()));
assertEquals(true, isnan(C.getVolume()));
assertTrue(C.getConstant() == true);
assertEquals(false, C.isSetId());
assertEquals(false, C.isSetSpatialDimensions());
assertEquals(false, C.isSetName());
assertEquals(false, C.isSetSize());
assertEquals(false, C.isSetVolume());
assertEquals(false, C.isSetUnits());
assertEquals(false, C.isSetOutside());
assertEquals(false, C.isSetConstant());
}
/// <summary>
/// Creates a Volume Parameter for a MoBi Container.
/// </summary>
private IEntity CreateVolumeParameter(Compartment compartment)
{
var volume = 1.0;
if (compartment.isSetVolume())
{
volume = compartment.getVolume();
}
else if (compartment.isSetSize())
{
volume = compartment.getSize();
}
var unit = compartment.getUnits();
var baseValue = _unitDefinitionImporter.ToMobiBaseUnit(unit, volume);
IFormula formula = _formulaFactory.ConstantFormula(baseValue.value, baseValue.dimension);
var volumeParameter = _objectBaseFactory.Create <IParameter>()
.WithName(SBMLConstants.VOLUME)
.WithDimension(baseValue.dimension)
.WithFormula(formula);
return(volumeParameter);
}