public override IGEPCodon GetCodonEncodingFunction(IFunctionIdentifier functionIdentifier, CodonType codonType = CodonType.Standard)
{
var codonRow = new CodonRow();
Qry.SelectAllFrom(codonRow)
.InnerJoinSelectingAllOn(codonRow.FunctionPairRowColumn)
.InnerJoinOn(codonRow.FunctionPairRow.PrimaryFunctionRowColumn)
.Where(codonRow.CodonTypeColumn, codonType.ToString())
.Where(codonRow.FunctionPairRow.PrimaryFunctionRow.FunctionIdentifierColumn, functionIdentifier.ToString())
.GoAndExtract(ref codonRow);
return codonRow.ToGEPCodon(this);
}
public override ICodon GetRandomCodon()
{
// Construct a Codon (randomly).
var codonName = "";
for (var i = 0; i < this.CodonLength; i++)
{
var nucleotide = this.Nucleotides.Values.RandomElement();
codonName += nucleotide.Identifier.ToString();
}
var codonRow = new CodonRow();
Qry.SelectAllFrom(codonRow)
.InnerJoinSelectingAllOn(codonRow.FunctionPairRowColumn)
.Where(codonRow.NameColumn, codonName)
.GoAndExtract(ref codonRow);
return codonRow.ToGEPCodon(this);
}
public override ICodon GetCodon(ICodonIdentifier codonIdentifier)
{
var codonRow = new CodonRow();
Qry.SelectAllFrom(codonRow)
.InnerJoinSelectingAllOn(codonRow.FunctionPairRowColumn)
.Where(codonRow.NameColumn, codonIdentifier.ToString())
.GoAndExtract(ref codonRow);
return codonRow.ToGEPCodon(this);
}
