private void InsertSaltsForAllCompounds_ItemClick(object sender, DevExpress.XtraBars.ItemClickEventArgs e)
{
DisplayStatusMsg("Inserting Salts, wait please...");
GetNormalizedListFromControl(CidList);
List <string> al = MoleculeUtil.InsertSalts(CidList.ToStringList());
CidList newList = new CidList(al);
newList.UserObject = CidList.UserObject;
StringBuilder listBuild = new StringBuilder(newList.Count * 12 + 32); // build formatted list here
foreach (CidListElement cle in newList.List)
{ // build formatted list with added items marked
listBuild.Append(CompoundId.Format(cle.Cid, RootTable));
if (!CidList.Contains(cle.Cid))
{
listBuild.Append(" (+)");
}
listBuild.Append("\r\n");
}
CidList = newList;
CidListCtl.Text = listBuild.ToString();
DisplayStatusMsg("");
return;
}
private void EditList_Click(object sender, EventArgs e)
{
string listText = CidListString.Trim();
List <string> al = Csv.SplitCsvString(listText);
CidList cnList = new CidList(al, true);
cnList.UserObject.Name = "Criteria List";
cnList.UserObject.Id = CidListEditor.EditInMemoryOnlyUoId; // indicate not to be persisted to user object
cnList = CidListEditor.Edit(cnList, Qc.MetaColumn.MetaTable.Root);
if (cnList == null)
{
return;
}
CidListString = CidList.BuildListCsvStringOfFormattedCids(Qc, cnList.ToStringList());
SetCidListDisplay();
if (CidListDisplayIsEditable() && CidListString.Length > 0) // no text selected
{
CidListDisplay.Select(0, 0);
}
else
{
InList.Focus();
}
}
private void ImportList_Click(object sender, EventArgs e)
{
string filePath = UIMisc.SelectListFileDialog("List File to Import", "");
if (String.IsNullOrEmpty(filePath))
{
return;
}
string fileName = Path.GetFileNameWithoutExtension(filePath);
CidList cnList = CidList.ReadFromFile(filePath); // read file list
if (cnList == null)
{
return;
}
CidListString = CidList.BuildListCsvStringOfFormattedCids(Qc, cnList.ToStringList());
SetCidListDisplay();
if (CidListDisplay.Text.Length > 0) // no text selected
{
CidListDisplay.Select(0, 0);
}
return;
}
/// <summary>
/// Set global QE parameter
/// </summary>
/// <param name="cidListString"></param>
public static void SetParameter(
string parm,
string value)
{
if (Lex.Eq(parm, "DatabaseSubset"))
{
if (Lex.IsNullOrEmpty(value))
{
DatabaseSubset = null;
}
else
{
DatabaseSubset = CidList.ToStringList(value);
}
}
else if (Lex.Eq(parm, "AllowNetezzaUse"))
{
bool.TryParse(value, out AllowNetezzaUse);
}
else if (Lex.Eq(parm, "AllowMultiTablePivot"))
{
bool.TryParse(value, out AllowMultiTablePivot);
}
else if (Lex.Eq(parm, "DefaultToSingleStepQueryExecution"))
{
bool.TryParse(value, out MqlUtil.DefaultToSingleStepQueryExecution);
}
return;
}
/// <summary>
/// Open the specified query or copy the list
/// </summary>
/// <param name="sender"></param>
/// <param name="e"></param>
private void GridView_RowCellClick(object sender, RowCellClickEventArgs e)
{
StreamReader sr;
int r = e.RowHandle;
int c = e.Column.AbsoluteIndex;
HistoryItem hi = SS.I.History[r]; // get item allowing for header row
if (c == 0) // open query
{
sr = new StreamReader(hi.QueryFileName);
string queryText = sr.ReadToEnd();
Query q = Query.Deserialize(queryText);
q.UserObject.Name = // append time to name
q.UserObject.Name + " - " + hi.DateTime.ToLongTimeString();
q.Mode = QueryMode.Build; // want to be in build mode
q.UserObject.Content = q.Serialize(); // set content so not prompted for save when closed
QbUtil.AddQueryAndRender(q, false);
}
// Copy list to current list
sr = new StreamReader(hi.ListFileName);
string listText = sr.ReadToEnd();
CidList cidList = new CidList(listText);
CidListCommand.WriteCurrentList(cidList);
SessionManager.CurrentResultKeys = cidList.ToStringList();
SessionManager.DisplayCurrentCount();
if (c == 1) // return message if just copying list to current
{
string msg = "The list has been copied to the current list (" + SessionManager.CurrentResultKeysCount + ")";
MessageBoxMx.Show(msg);
}
HistoryList_Deactivate(null, null);
return;
}
/// <summary>
/// Read a compound id list given an internal list name (e.g. FOLDER_123.name or LIST_1234)
/// </summary>
/// <param name="name"></param>
/// <param name="mt"></param>
/// <returns></returns>
public static CidList Read(
string internalName,
MetaTable mt,
bool allowLocalRead)
{
UserObject uo, uo2;
string fileName, cn;
int i1;
uo = UserObjectUtil.ParseInternalUserObjectName(internalName, UserObjectType.CnList);
if (uo == null)
{
return(null);
}
if (allowLocalRead && UserObject.IsCurrentObjectInternalName(internalName)) // get from the current query
{
return(ReadCurrentListLocal());
}
uo2 = UserObjectDao.Read(uo); // get from the server side
if (uo2 == null)
{
MessageBoxMx.ShowError(
"Unable to find list: " + internalName + "\r\n\r\n" +
CommandExec.GetUserObjectReadAccessErrorMessage(uo.Id, "list"));
return(null);
}
CidList cnList = CidList.Deserialize(uo2, mt);
if (UserObject.IsCurrentObjectInternalName(internalName)) // if current list store keys with query
{
SessionManager.CurrentResultKeys = cnList.ToStringList();
}
return(cnList);
}
/// <summary>
/// Write a compound number list
/// </summary>
/// <returns></returns>
public static int Write(
CidList list,
UserObject uo)
{
string fileName;
string content = list.ToMultilineString();
uo.Type = UserObjectType.CnList;
if (Lex.IsNullOrEmpty(uo.Owner)) // set current user as owner if owner not defined
{
uo.Owner = SS.I.UserName;
}
if (Lex.IsNullOrEmpty(uo.ParentFolder))
{
throw new Exception("No parent folder for list");
}
uo.Content = content;
uo.Count = list.Count;
UserObjectDao.Write(uo, uo.Id);
if (uo.IsCurrentObject)
{
SessionManager.CurrentResultKeys = list.ToStringList();
SessionManager.DisplayCurrentCount();
}
if (uo.HasDefinedParentFolder)
{
MainMenuControl.UpdateMruList(uo.InternalName);
}
return(list.Count);
}
/// <summary>
/// Attempt to read existing results file into the query DataTable
/// </summary>
/// <param name="qm"></param>
public void ReadBinaryResultsFile(string fileName)
{
QueryTable qt;
QueryColumn qc;
BinaryReader br = null;
Stopwatch sw = Stopwatch.StartNew();
try
{
bool saveHandlersEnabled = Qm.DataTable.EnableDataChangedEventHandlers(false); // disable for faster load
bool saveUpdateMaxRowsPerKey = UpdateMaxRowsPerKeyEnabled;
UpdateMaxRowsPerKeyEnabled = false; // disable for faster load
int id = Query.UserObject.Id;
if (id <= 0)
{
throw new Exception("Query not saved");
}
if (DataTableMx == null || DataTableMx.Columns.Count == 0)
{
throw new Exception("DataTable not defined");
}
br = BinaryFile.OpenReader(fileName);
string sq = br.ReadString();
Query q0 = Query.Deserialize(sq); // deserialize the saved query
QueryManager qm0 = new QueryManager();
qm0.LinkMember(q0);
ResultsFormat rf0 = new ResultsFormat(qm0, OutputDest.WinForms);
ResultsFormatFactory rff0 = new ResultsFormatFactory(qm0, OutputDest.WinForms);
rff0.Build(); // build format with vo positions
// The cached query cols should match those of the current query: however,
// we'll create a mapping just in case they don't
int voArrayLen0 = br.ReadInt32(); // cached vo array len
int voArrayLen = DataTableMx.Columns.Count - KeyValueVoPos; // current query vo array len
List <int> q0VoMap = new List <int>(); // vo position in cached query data
List <int> qVoMap = new List <int>(); // vo position in current version of query
q0VoMap.Add(0); // first position is the common key value
qVoMap.Add(0);
foreach (QueryTable qt0 in q0.Tables) // scan each table in cached data
{
foreach (QueryColumn qc0 in qt0.QueryColumns) // and each column
{
if (qc0.VoPosition < 0)
{
continue; // skip if not mapped to the vo in cached data
}
int q0VoPos = qc0.VoPosition - KeyValueVoPos; // where it is in cache
int qvoPos = -1; // where it will go
qt = Query.GetTableByName(qt0.MetaTable.Name);
if (qt != null)
{
qc = qt.GetQueryColumnByName(qc0.MetaColumn.Name);
if (qc != null)
{
qvoPos = qc.VoPosition - KeyValueVoPos;
}
}
q0VoMap.Add(q0VoPos); // where it is in saved data
qVoMap.Add(qvoPos); // where it will go (not including attributes & check cols)
}
}
if (q0VoMap.Count != voArrayLen0)
{
throw new Exception("Cached Vo length doesn't match list of selected columns");
}
DataTableMx.Clear(); // clear the rows
CidList cidList = new CidList();
object[] voa = new object[voArrayLen]; // array to fill
while (!BinaryFile.ReaderEof(br)) // process each row
{
for (int mi = 0; mi < q0VoMap.Count; mi++) // each col
{
object o = VoArray.ReadBinaryItem(br);
if (mi == 0 && o != null) // add to key list if key
{
cidList.Add(o.ToString(), false);
}
if (qVoMap[mi] >= 0) // save in new buf if mapped
{
voa[qVoMap[mi]] = o;
}
}
DataRowMx dr = AddDataRow(voa);
}
br.Close();
Qm.DataTable.EnableDataChangedEventHandlers(saveHandlersEnabled);
UpdateMaxRowsPerKeyEnabled = saveUpdateMaxRowsPerKey;
InitializeRowAttributes(false);
ResultsKeys = cidList.ToStringList(); // include keys in DTM as well
double ms = sw.Elapsed.TotalMilliseconds;
return;
}
catch (Exception ex)
{
if (br != null)
{
br.Close();
}
throw new Exception(ex.Message, ex);
}
}
/// <summary>
/// Setup the form for display
/// </summary>
/// <param name="cid"></param>
/// <param name="qm"></param>
/// <returns></returns>
bool SetupForm(
string cid,
QueryManager qm)
{
AssertMx.IsDefined(cid, "Compound Id (CorpId)");
SelectedCid = cid;
PreviousCid = cid;
RootTable = CompoundId.GetRootMetaTableFromCid(cid);
Qm = null; // no query context
SourceQuery = null;
CurrentBaseQueryCidHitList = null;
if (qm != null) // if querymanager defined then base the related data query on the "current" query
{
Qm = qm; // setup query context
SourceQuery = qm.Query;
RootTable = qm.Query.RootMetaTable;
if (qm.Query != null && qm.Query.Mode == QueryMode.Browse) // if browsing current base query results then get that cid list
{
CurrentBaseQueryCidHitList = Qm.DataTableManager.GetMostCompleteResultsKeyList();
}
}
//else throw new Exception("Parameters not defined");
//if (Lex.IsUndefined(SelectedCid) &&
// (Qm == null || Qm.MoleculeGrid == null || Qm.MoleculeGrid.Helpers == null))
// return false;
SetupCheckmarks();
// Current Cid
//if (Qm != null)
// SelectedCid = Qm.MoleculeGrid.Helpers.GetCidForSelectedCell();
SelectedCid = CompoundId.Format(SelectedCid);
CidCtl.Text = SelectedCid;
//CidCtl.Focus();
// Marked cid count
MarkedCidsList = null;
if (Qm?.MoleculeGrid != null)
{
CidList cl = Qm.MoleculeGrid.GetMarkedList();
if (cl != null)
{
MarkedCidsList = cl.ToStringList();
}
}
int selCnt = (MarkedCidsList != null ? MarkedCidsList.Count : 0);
MarkedCidsCheckEdit.Text = "Selected compound Ids (" + FormatCidListForDisplay(MarkedCidsList) + ")";
MarkedCidsCheckEdit.Enabled = (selCnt > 0);
if (selCnt == 0 && MarkedCidsCheckEdit.Checked)
{
CurrentCidCheckEdit.Checked = true;
}
// All Cid count
int allCnt = (CurrentBaseQueryCidHitList != null ? CurrentBaseQueryCidHitList.Count : 0);
AllCidsCheckEdit.Text = "All Ids in the current result set (" + FormatCidListForDisplay(CurrentBaseQueryCidHitList) + ")";
AllCidsCheckEdit.Enabled = (allCnt > 0);
if (selCnt == 0 && AllCidsCheckEdit.Checked)
{
CurrentCidCheckEdit.Checked = true;
}
// Structure
MoleculeMx cs = new MoleculeMx();
if (Lex.IsDefined(SelectedCid))
{
cs = MoleculeUtil.SelectMoleculeForCid(SelectedCid);
}
QueryMolCtl.SetupAndRenderMolecule(cs);
// MRU list
RenderMruList();
return(true);
}
/// <summary>
/// Analyze key criteria in token list.
/// A saved list reference is returned as a set of key values &
/// blanked out in the token list.
/// Other key references are returned as a set of indexes in a list.
/// </summary>
/// <param name="q"></param>
/// <param name="Qtd"></param>
/// <param name="tokens"></param>
/// <param name="keyCriteriaPositions">Token indexes for key criteria column names</param>
/// <param name="keyCriteriaSavedListKeys">Keys in any referenced saved list</param>
/// <param name="keyCriteriaInListKeys">Keys in any literal list </param>
/// <param name="keyCriteriaConstantPositions">Positions of key values for literal lists</param>
public static void AnalyzeKeyCriteria(
Query q,
QueryTableData[] Qtd,
List <MqlToken> tokens,
out CompareOp keyCriteriaOp,
out List <int> keyCriteriaPositions,
out List <string> keyCriteriaSavedListKeys,
out List <string> keyCriteriaInListKeys,
out List <int> keyCriteriaConstantPositions)
{
string tok1, tok2, tok3, tok4, tok5;
keyCriteriaOp = CompareOp.Unknown;
keyCriteriaPositions = new List <int>();
keyCriteriaSavedListKeys = null;
keyCriteriaInListKeys = null;
keyCriteriaConstantPositions = new List <int>();
for (int tki = 0; tki < tokens.Count; tki++)
{
QueryColumn qc = tokens[tki].Qc;
if (qc == null)
{
continue;
}
if (!qc.IsKey)
{
continue;
}
keyCriteriaPositions.Add(tki); // remember position of key col reference
if (tokens.Count < tki + 2)
{
throw new QueryException("Incomplete compound id criteria at end of statement");
}
bool notLogic = false;
tok1 = GetTokenListString(tokens, tki + 1);
if (Lex.Eq(tok1, "Not"))
{
notLogic = true;
tki++;
if (tokens.Count < tki + 2)
{
throw new QueryException("Incomplete compound id criteria at end of statement");
}
tok1 = GetTokenListString(tokens, tki + 1);
}
tok2 = GetTokenListString(tokens, tki + 2);
tok3 = GetTokenListString(tokens, tki + 3);
tok4 = GetTokenListString(tokens, tki + 4);
tok5 = GetTokenListString(tokens, tki + 5);
// Saved List
if (tokens.Count > tki + 3 && Lex.Eq(tok1, "In") &&
Lex.Eq(tok2, "List"))
{ // have a saved list
keyCriteriaOp = CompareOp.InList;
if (keyCriteriaSavedListKeys != null) // already have it?
{
throw new UserQueryException("Only one condition is allowed for the " + qc.ActiveLabel + " field");
}
if (notLogic) // not currently allowed for saved lists
{
throw new UserQueryException("\"Not\" logic is not allowed for " + qc.ActiveLabel + " saved lists");
}
string listName = tokens[tki + 3].Tok.Text;
UserObject uo = ResolveCidListReference(listName);
if (uo == null)
{
throw new UserQueryException("Key list " + listName + " not found");
}
listName = uo.InternalName;
CidList keyCriteriaSavedList = CidListDao.Read(listName, QueryEngine.GetRootTable(q));
if (keyCriteriaSavedList == null)
{
throw new UserQueryException("Key list " + listName + " not found");
}
keyCriteriaSavedListKeys = keyCriteriaSavedList.ToStringList();
tokens[tki].Qc = null;
tokens[tki].Tok.Text = "";
for (int tki2 = tki + 1; tki2 <= tki + 3; tki2++)
{
tokens[tki2].Tok.Text = "";
}
if (!MqlUtil.DisableAdjacentAndLogic(tokens, tki, tki + 3))
{
throw new UserQueryException("Only \"And\" logic is allowed with " +
qc.ActiveLabel + " saved lists");
}
int ti = q.GetQueryTableIndexByAlias(qc.QueryTable.Alias);
Qtd[ti].CriteriaCount--;
keyCriteriaPositions.RemoveAt(keyCriteriaPositions.Count - 1);
}
// Explicit list of allowed keys
else if (tokens.Count > tki + 2 && Lex.Eq(tok1, "In") &&
Lex.Eq(tok2, "("))
{
keyCriteriaOp = CompareOp.In;
int listKeyCount = 0; // count keys in this list
for (int tki2 = tki + 3; tki2 < tokens.Count; tki2++)
{
tok1 = tokens[tki2].Tok.Text;
if (tok1 == ",")
{
continue;
}
else if (tok1 == ")")
{
break;
}
keyCriteriaConstantPositions.Add(tki2);
if (keyCriteriaInListKeys == null)
{
keyCriteriaInListKeys = new List <string>();
}
MetaTable rootTable = QueryEngine.GetRootTable(q);
string normKey = CompoundId.Normalize(tok1, rootTable);
if (normKey != null && normKey != "")
{
keyCriteriaInListKeys.Add(normKey);
listKeyCount++;
}
}
if (listKeyCount == 0)
{
throw new UserQueryException("The query contains an invalid empty list of " + qc.ActiveLabel + "s");
}
}
// Between a range of key values
else if (tokens.Count > tki + 4 && Lex.Eq(tok1, "Between") &&
Lex.Eq(tok3, "And"))
{
keyCriteriaOp = CompareOp.Between;
keyCriteriaConstantPositions.Add(tki + 2);
keyCriteriaConstantPositions.Add(tki + 4);
}
// Single key value, treat like a list with a single value
else if (Lex.Eq(tok1, "="))
{
keyCriteriaOp = CompareOp.Eq;
keyCriteriaConstantPositions.Add(tki + 2);
if (keyCriteriaInListKeys == null)
{
keyCriteriaInListKeys = new List <string>();
}
MetaTable rootTable = QueryEngine.GetRootTable(q);
string normKey = CompoundId.Normalize(tok2, rootTable);
if (Lex.IsDefined(normKey))
{
keyCriteriaInListKeys.Add(normKey);
}
}
// Other binary operator
else if (MqlUtil.IsBasicComparisonOperator(tok1))
{
keyCriteriaOp = CompareOpString.ToCompareOp(tok1);
keyCriteriaConstantPositions.Add(tki + 2);
}
// Unary operator "is null"
else if (Lex.Eq(tok1, "Is") && Lex.Eq(tok2, "Null"))
{
keyCriteriaOp = CompareOp.IsNull;
}
// Unary operator "is not null"
else if (Lex.Eq(tok1, "Is") && Lex.Eq(tok2, "Not") && Lex.Eq(tok3, "Null"))
{
keyCriteriaOp = CompareOp.IsNotNull;
}
else
{
throw new QueryException("Unrecognized compound id condition " + tok1);
}
}
return;
}