public void OkDialog()
{
string message;
if (Source == SpectralLibrarySource.file)
{
string path = textFilePath.Text;
message = ValidateSpectralLibraryPath(path);
if (message != null)
{
MessageDlg.Show(this, message);
textFilePath.Focus();
return;
}
}
var librarySpec = Library;
if (librarySpec == null)
{
MessageDlg.Show(this, Resources.ImportIonMobilityFromSpectralLibrary_OkDialog_Please_choose_the_library_you_would_like_to_add_);
return;
}
var table = new ChargeRegressionTable(gridRegression);
var chargeRegressionLinesList = table.GetTableChargeRegressionLines();
if (chargeRegressionLinesList == null) // Some error detected in the charged regression lines table
return;
ChargeRegressionsLines = chargeRegressionLinesList.ToDictionary(x => x.Charge, x => x.RegressionLine);
// Have we got everything we need to populate the caller's grid view?
message = _gridViewDriver.ImportFromSpectralLibrary(librarySpec, ChargeRegressionsLines);
if (message == null)
{
DialogResult = DialogResult.OK;
}
else
{
MessageDlg.Show(this, message);
}
}
/// <summary>
/// Test various error conditions in EditDriftTimePredictorDlg.cs
/// </summary>
public void TestEditDriftTimePredictorDlgErrorHandling()
{
AssertEx.Contains(EditDriftTimePredictorDlg.ValidateResolvingPower(0), Resources.EditDriftTimePredictorDlg_ValidateResolvingPower_Resolving_power_must_be_greater_than_0_);
AssertEx.Contains(EditDriftTimePredictorDlg.ValidateResolvingPower(-1), Resources.EditDriftTimePredictorDlg_ValidateResolvingPower_Resolving_power_must_be_greater_than_0_);
Assert.IsNull(EditDriftTimePredictorDlg.ValidateResolvingPower(1));
AssertEx.Contains(MeasuredDriftTimeTable.ValidateCharge(0),
String.Format(
Resources.EditDriftTimePredictorDlg_ValidateCharge_The_entry__0__is_not_a_valid_charge__Precursor_charges_must_be_integer_values_between_1_and__1__,
0, TransitionGroup.MAX_PRECURSOR_CHARGE));
AssertEx.Contains(MeasuredDriftTimeTable.ValidateCharge(99),
String.Format(
Resources.EditDriftTimePredictorDlg_ValidateCharge_The_entry__0__is_not_a_valid_charge__Precursor_charges_must_be_integer_values_between_1_and__1__,
99, TransitionGroup.MAX_PRECURSOR_CHARGE));
string[] dtValues = { null, null, null, null };
AssertEx.Contains(MeasuredDriftTimeTable.ValidateMeasuredDriftTimeCellValues(new[] { "", "" }),
Resources.MeasuredDriftTimeTable_ValidateMeasuredDriftTimeCellValues_The_pasted_text_must_have_three_columns_);
AssertEx.Contains(MeasuredDriftTimeTable.ValidateMeasuredDriftTimeCellValues(dtValues),
Resources.MeasuredDriftTimeTable_ValidateMeasuredDriftTimeCellValues_A_modified_peptide_sequence_is_required_for_each_entry_);
dtValues[0] = "$%$%!";
AssertEx.Contains(MeasuredDriftTimeTable.ValidateMeasuredDriftTimeCellValues(dtValues),
String.Format(Resources.MeasuredDriftTimeTable_ValidateMeasuredDriftTimeCellValues_The_sequence__0__is_not_a_valid_modified_peptide_sequence_, dtValues[0]));
dtValues[0] = "JKLM";
dtValues[1] = "dog";
dtValues[2] = "-0.2"; // HighEnergyDriftTimeOffsetMsec
AssertEx.Contains(MeasuredDriftTimeTable.ValidateMeasuredDriftTimeCellValues(dtValues),
String.Format(Resources.EditDriftTimePredictorDlg_ValidateCharge_The_entry__0__is_not_a_valid_charge__Precursor_charges_must_be_integer_values_between_1_and__1__,
dtValues[EditDriftTimePredictorDlg.COLUMN_CHARGE].Trim(), TransitionGroup.MAX_PRECURSOR_CHARGE));
dtValues[2] = (17.9).ToString(CultureInfo.CurrentCulture);
dtValues[1] = "2";
Assert.IsNull(MeasuredDriftTimeTable.ValidateMeasuredDriftTimeCellValues(dtValues),
string.Format("unexpected error {0}", MeasuredDriftTimeTable.ValidateMeasuredDriftTimeCellValues(dtValues)));
dtValues[2] = "fish";
AssertEx.Contains(MeasuredDriftTimeTable.ValidateMeasuredDriftTimeCellValues(dtValues),
String.Format(Resources.MeasuredDriftTimeTable_ValidateMeasuredDriftTimeCellValues_The_value__0__is_not_a_valid_drift_time_, dtValues[EditDriftTimePredictorDlg.COLUMN_DRIFT_TIME_MSEC].Trim()));
AssertEx.Contains(ChargeRegressionTable.ValidateCharge(0),
String.Format(
Resources.EditDriftTimePredictorDlg_ValidateCharge_The_entry__0__is_not_a_valid_charge__Precursor_charges_must_be_integer_values_between_1_and__1__,
0, TransitionGroup.MAX_PRECURSOR_CHARGE));
AssertEx.Contains(ChargeRegressionTable.ValidateCharge(99),
String.Format(
Resources.EditDriftTimePredictorDlg_ValidateCharge_The_entry__0__is_not_a_valid_charge__Precursor_charges_must_be_integer_values_between_1_and__1__,
99, TransitionGroup.MAX_PRECURSOR_CHARGE));
Assert.IsNull(ChargeRegressionTable.ValidateCharge(1));
Assert.IsNull(ChargeRegressionTable.ValidateCharge(TransitionGroup.MAX_PRECURSOR_CHARGE));
string[] values = { "", "", "" };
AssertEx.Contains(ChargeRegressionTable.ValidateRegressionCellValues(values),
string.Format(
Resources.EditDriftTimePredictorDlg_ValidateRegressionCellValues_the_value__0__is_not_a_valid_charge__Charges_must_be_integer_values_between_1_and__1__,
values[0], TransitionGroup.MAX_PRECURSOR_CHARGE));
values[0] = "1";
AssertEx.Contains(ChargeRegressionTable.ValidateRegressionCellValues(values),
string.Format(Resources.EditDriftTimePredictorDlg_ValidateRegressionCellValues_the_value__0__is_not_a_valid_slope_, values[1]));
values[1] = "1";
AssertEx.Contains(ChargeRegressionTable.ValidateRegressionCellValues(values),
string.Format(Resources.EditDriftTimePredictorDlg_ValidateRegressionCellValues_the_value__0__is_not_a_valid_intercept_, values[2]));
values[2] = "1";
Assert.IsNull(ChargeRegressionTable.ValidateRegressionCellValues(values));
object[] column = { "1" };
AssertEx.Contains(CollisionalCrossSectionGridViewDriverBase <ValidatingIonMobilityPeptide> .ValidateRow(column, 1),
Resources.CollisionalCrossSectionGridViewDriverBase_ValidateRow_The_pasted_text_must_have_at_least_two_columns_);
object[] columns = { "", "", "" };
const int lineNumber = 1;
AssertEx.Contains(CollisionalCrossSectionGridViewDriverBase <ValidatingIonMobilityPeptide> .ValidateRow(columns, lineNumber),
string.Format(Resources.CollisionalCrossSectionGridViewDriverBase_ValidateRow_Missing_peptide_sequence_on_line__0__, lineNumber));
columns[0] = "@#%!";
AssertEx.Contains(CollisionalCrossSectionGridViewDriverBase <ValidatingIonMobilityPeptide> .ValidateRow(columns, lineNumber),
string.Format(Resources.CollisionalCrossSectionGridViewDriverBase_ValidateRow_The_text__0__is_not_a_valid_peptide_sequence_on_line__1__, columns[0], lineNumber));
columns[0] = "JKLM";
AssertEx.Contains(CollisionalCrossSectionGridViewDriverBase <ValidatingIonMobilityPeptide> .ValidateRow(columns, lineNumber),
string.Format(Resources.CollisionalCrossSectionGridViewDriverBase_ValidateRow_Missing_collisional_cross_section_value_on_line__0__, lineNumber));
columns[1] = "fish";
AssertEx.Contains(CollisionalCrossSectionGridViewDriverBase <ValidatingIonMobilityPeptide> .ValidateRow(columns, lineNumber),
string.Format(Resources.CollisionalCrossSectionGridViewDriverBase_ValidateRow_Invalid_number_format__0__for_collisional_cross_section_on_line__1__,
columns[1], lineNumber));
columns[1] = "0";
AssertEx.Contains(CollisionalCrossSectionGridViewDriverBase <ValidatingIonMobilityPeptide> .ValidateRow(columns, lineNumber),
string.Format(Resources.CollisionalCrossSectionGridViewDriverBase_ValidateRow_The_collisional_cross_section__0__must_be_greater_than_zero_on_line__1__,
columns[1], lineNumber));
columns[1] = "1";
Assert.IsNull(CollisionalCrossSectionGridViewDriverBase <ValidatingIonMobilityPeptide> .ValidateRow(columns, lineNumber));
columns[2] = "zeke"; // HighEnergyDriftTimeOffsetMsec
AssertEx.Contains(CollisionalCrossSectionGridViewDriverBase <ValidatingIonMobilityPeptide> .ValidateRow(columns, lineNumber),
string.Format(Resources.CollisionalCrossSectionGridViewDriverBase_ValidateRow_Invalid_number_format__0__for_high_energy_drift_time_offset_on_line__1__,
columns[2], lineNumber));
columns[2] = ""; // HighEnergyDriftTimeOffsetMsec
Assert.IsNull(CollisionalCrossSectionGridViewDriverBase <ValidatingIonMobilityPeptide> .ValidateRow(columns, lineNumber));
columns[2] = "1"; // HighEnergyDriftTimeOffsetMsec (usually negative, but we don't demand it)
Assert.IsNull(CollisionalCrossSectionGridViewDriverBase <ValidatingIonMobilityPeptide> .ValidateRow(columns, lineNumber));
var pep = new ValidatingIonMobilityPeptide(null, 0, 0);
AssertEx.Contains(pep.Validate(), Resources.ValidatingIonMobilityPeptide_ValidateSequence_A_modified_peptide_sequence_is_required_for_each_entry_);
const string seq = "@#%!";
pep = new ValidatingIonMobilityPeptide(seq, 0, 0);
AssertEx.Contains(pep.Validate(), string.Format(
Resources.ValidatingIonMobilityPeptide_ValidateSequence_The_sequence__0__is_not_a_valid_modified_peptide_sequence_, seq));
pep = new ValidatingIonMobilityPeptide("JLKM", 0, 0);
AssertEx.Contains(pep.Validate(),
Resources.ValidatingIonMobilityPeptide_ValidateCollisionalCrossSection_Measured_collisional_cross_section_values_must_be_valid_decimal_numbers_greater_than_zero_);
pep = new ValidatingIonMobilityPeptide("JLKM", 1, 0);
Assert.IsNull(pep.Validate());
}
