public static List <CV> trans(CVParamList paramList)
{
List <CV> cvList = new List <CV>();
foreach (var cvParam in paramList)
{
cvList.Add(new CV(cvParam));
}
return(cvList);
}
public static List <CV> trans(Spectrum spectrum)
{
List <CV> cvList = new List <CV>();
CVParamList cvParamList = spectrum.cvParams;
foreach (var cvParam in cvParamList)
{
cvList.Add(new CV(cvParam));
}
return(cvList);
}
public void populateFromMSData(MSData msInfo)
{
hasDetails = true;
spectra = msInfo.run.spectrumList == null ? 0 : msInfo.run.spectrumList.size();
ionSource = analyzer = detector = "";
foreach (InstrumentConfiguration ic in msInfo.instrumentConfigurationList)
{
SortedDictionary <int, string> ionSources = new SortedDictionary <int, string>();
SortedDictionary <int, string> analyzers = new SortedDictionary <int, string>();
SortedDictionary <int, string> detectors = new SortedDictionary <int, string>();
foreach (pwiz.CLI.msdata.Component c in ic.componentList)
{
CVParam term;
switch (c.type)
{
case ComponentType.ComponentType_Source:
term = c.cvParamChild(CVID.MS_ionization_type);
if (!term.empty())
{
ionSources.Add(c.order, term.name);
}
break;
case ComponentType.ComponentType_Analyzer:
term = c.cvParamChild(CVID.MS_mass_analyzer_type);
if (!term.empty())
{
analyzers.Add(c.order, term.name);
}
break;
case ComponentType.ComponentType_Detector:
term = c.cvParamChild(CVID.MS_detector_type);
if (!term.empty())
{
detectors.Add(c.order, term.name);
}
break;
}
}
if (ionSource.Length > 0)
{
ionSource += ", ";
}
ionSource += String.Join("/", new List <string>(ionSources.Values).ToArray());
if (analyzer.Length > 0)
{
analyzer += ", ";
}
analyzer += String.Join("/", new List <string>(analyzers.Values).ToArray());
if (detector.Length > 0)
{
detector += ", ";
}
detector += String.Join("/", new List <string>(detectors.Values).ToArray());
}
System.Collections.Generic.Set <string> contentTypes = new System.Collections.Generic.Set <string>();
CVParamList cvParams = msInfo.fileDescription.fileContent.cvParams;
if (cvParams.Count > 0)
{
foreach (CVParam term in msInfo.fileDescription.fileContent.cvParams)
{
contentTypes.Add(term.name);
}
contentType = String.Join(", ", new List <string>(contentTypes.Keys).ToArray());
}
}
