public SerializedAlignmentContainer(UInt64 sizeInBytes)
{
// Reduce the size to 50% to ensure we don't exceed limits.
// Need to save some memory for _bamAlignmentList as well.
// Also, tests (on linux with mono) show that 3-4 GB of data is
// briefly used after sorting, presumably while writing the
// data. It's not clear to me what is using this memory, but
// until I track that down, a 50% limit should work, albeit not
// as efficiently as possible.
_serializedAlignments = new BigByteArray(5 * (sizeInBytes / 10));
_bamAlignmentList = new List <SerializedBamAlignment>();
_offset = 0;
}
static void Main(string[] args)
{
long size = 0x1FFFFFFFF;
//long size = UInt32.MaxValue;
//long size = int.MaxValue;
//byte[] countryCodes = new byte[size];
BigByteArray baInt = new BigByteArray(size);
long len = baInt.Length;
for (long i = 0; i < len; i++)
{
baInt[i] = 255;
Console.Title = i.ToString();
}
Console.WriteLine("baInt[len/2] = " + baInt[len / 2]);
Console.ReadKey();
}
