public BackgroundProteome(BackgroundProteomeSpec backgroundProteomeSpec, bool queryDigestions)
: base(backgroundProteomeSpec.Name, backgroundProteomeSpec.DatabasePath)
{
_digestionNames = new HashSet <string>();
_cache = new BackgroundProteomeMetadataCache(this);
if (!IsNone)
{
try
{
using (var proteomeDb = OpenProteomeDb())
{
if (queryDigestions)
{
_digestionNames.UnionWith(proteomeDb.ListDigestions().Select(digestion => digestion.Name));
}
}
}
catch (Exception)
{
DatabaseInvalid = true;
}
}
if (queryDigestions)
{
DatabaseValidated = true;
}
}
public BackgroundProteome(BackgroundProteomeSpec backgroundProteomeSpec)
: base(backgroundProteomeSpec.Name, backgroundProteomeSpec.DatabasePath)
{
_cache = new BackgroundProteomeMetadataCache(this);
if (!IsNone)
{
try
{
OpenProteomeDb();
}
catch (Exception)
{
DatabaseInvalid = true;
}
}
DatabaseValidated = true;
}
private BackgroundProteome()
{
_cache = new BackgroundProteomeMetadataCache(this);
}
private BackgroundProteome()
{
_digestionNames = new HashSet <string>();
_cache = new BackgroundProteomeMetadataCache(this);
}
