public PiscesFileParser()
{
if (ProtCidSettings.dirSettings == null)
{
ProtCidSettings.LoadDirSettings();
}
if (ProtCidSettings.alignmentDbConnection == null)
{
ProtCidSettings.alignmentDbConnection = new DbConnect();
}
if (ProtCidSettings.alignmentDbConnection.ConnectString == "")
{
ProtCidSettings.alignmentDbConnection.ConnectString = "DRIVER=Firebird/InterBase(r) driver;" +
"UID=SYSDBA;PWD=fbmonkeyox;DATABASE=" + ProtCidSettings.dirSettings.alignmentDbPath;
}
asymChainFinder = new AsuInfoFinder(ProtCidSettings.dirSettings.pdbfamDbPath);
}
