public void TestWrite()
{
TextFileDefinition def = new TextFileDefinition();
def.Delimiter = '\t';
def.Description = "Test File ...";
def.Add(new FileDefinitionItem()
{
AnnotationName = "AnnoKey1",
PropertyName = "PropName1",
ValueType = "double",
Format = "{0:0.0000}"
});
def.Add(new FileDefinitionItem()
{
AnnotationName = "AnnoKey2",
PropertyName = "PropName2",
ValueType = "int"
});
def.Add(new FileDefinitionItem()
{
AnnotationName = "AnnoKey3",
PropertyName = "PropName3",
ValueType = "string"
});
var newfile = @TestContext.CurrentContext.TestDirectory + "/../../../data//TextFileDefinition2.xml";
def.WriteToFile(newfile);
AssertUtils.AssertFileEqual(DefinitionFile, newfile);
File.Delete(newfile);
}
public void TestSave()
{
DistributionOptionXmlFormat format = new DistributionOptionXmlFormat();
var actual = format.ReadFromFile(filePath);
string tmpFile = filePath + ".tmp";
format.WriteToFile(tmpFile, actual);
AssertUtils.AssertFileEqual(tmpFile, filePath);
File.Delete(tmpFile);
}
public void TestWriteToFile()
{
var item = new O18QuantificationSummaryItem();
item.RawFilename = @"D:\sqh\Science\Project/4NLFOR.raw";
item.PeptideSequence = "AFATDITDAEEDK";
item.PeptideAtomComposition = "C60H92N14O26";
item.PurityOfO18Water = 0.95;
item.PeptideProfile = IsotopicBuilderFactory.GetBuilder().GetProfile(new AtomComposition(item.PeptideAtomComposition), 1, 10);
item.ObservedEnvelopes = new List <O18QuanEnvelope> ();
var pkl1 = new O18QuanEnvelope();
pkl1.ScanTimes.Add(new ScanTime(6741, 12.34));
pkl1.Enabled = true;
pkl1.IsIdentified = true;
pkl1.Add(new Peak(713.3209, 424345.9));
pkl1.Add(new Peak(713.8254, 198378.3));
pkl1.Add(new Peak(714.3221, 246866.8));
pkl1.Add(new Peak(714.8242, 221648.0));
pkl1.Add(new Peak(715.3243, 107701.3));
pkl1.Add(new Peak(715.8316, 0.0));
item.ObservedEnvelopes.Add(pkl1);
var pkl2 = new O18QuanEnvelope();
pkl2.ScanTimes.Add(new ScanTime(6746, 13.34));
pkl2.Enabled = false;
pkl2.Add(new Peak(713.3209, 796597.7));
pkl2.Add(new Peak(713.8254, 530778.4));
pkl2.Add(new Peak(714.3221, 456099.6));
pkl2.Add(new Peak(714.8242, 339509.8));
pkl2.Add(new Peak(715.3243, 182812.3));
pkl2.Add(new Peak(715.8316, 0.0));
item.ObservedEnvelopes.Add(pkl2);
item.SpeciesAbundance = new SpeciesAbundanceInfo();
item.SpeciesAbundance.O16 = 79184307.0;
item.SpeciesAbundance.O181 = 39464386.0;
item.SpeciesAbundance.O182 = 440969.4;
item.SampleAbundance = new SampleAbundanceInfo();
item.SampleAbundance.LabellingEfficiency = 0.0219;
item.SampleAbundance.Ratio = 50;
item.SampleAbundance.O16 = 0;
item.SampleAbundance.O18 = 922867772.7;
item.SpeciesAbundance.RegressionCorrelation = 0.9999;
item.SpeciesAbundance.RegressionItems.Clear();
item.SpeciesAbundance.RegressionItems.Add(new SpeciesRegressionItem(713.3209, 36513020.6, 36512100.5));
item.SpeciesAbundance.RegressionItems.Add(new SpeciesRegressionItem(713.8254, 26438219.2, 26447909.0));
item.SpeciesAbundance.RegressionItems.Add(new SpeciesRegressionItem(714.3221, 29639265.4, 29595148.6));
item.SpeciesAbundance.RegressionItems.Add(new SpeciesRegressionItem(714.8242, 16687280.4, 16812006.0));
item.SpeciesAbundance.RegressionItems.Add(new SpeciesRegressionItem(715.3243, 7087781.0, 6823450.3));
item.SpeciesAbundance.RegressionItems.Add(new SpeciesRegressionItem(715.8316, 1799203.9, 2164120.0));
new O18QuantificationSummaryItemXmlFormat().WriteToFile(@TestContext.CurrentContext.TestDirectory + "/../../../data//O18QuantificationInformation.xml.tmp", item);
AssertUtils.AssertFileEqual(@TestContext.CurrentContext.TestDirectory + "/../../../data//O18QuantificationInformation.xml.tmp",
@TestContext.CurrentContext.TestDirectory + "/../../../data//O18QuantificationInformation.xml");
new FileInfo(@TestContext.CurrentContext.TestDirectory + "/../../../data//O18QuantificationInformation.xml.tmp").Delete();
}
