public void TestAllAlphabetsToString()
{
DnaAlphabet dna = DnaAlphabet.Instance;
RnaAlphabet rna = RnaAlphabet.Instance;
ProteinAlphabet protein = ProteinAlphabet.Instance;
AmbiguousDnaAlphabet dnaAmbiguous = AmbiguousDnaAlphabet.Instance;
AmbiguousRnaAlphabet rnaAmbiguous = AmbiguousRnaAlphabet.Instance;
AmbiguousProteinAlphabet proteinAmbiguous = AmbiguousProteinAlphabet.Instance;
string dnaStringActual = dna.ToString();
string rnaStringActual = rna.ToString();
string proteinStringActual = protein.ToString();
string dnaAmbiguousStringActual = dnaAmbiguous.ToString();
string rnaAmbiguousStringActual = rnaAmbiguous.ToString();
string proteinAmbiguousStringActual = proteinAmbiguous.ToString();
string dnaStringExpected = "ACGT-";
string rnaStringExpected = "ACGU-";
string proteinStringExpected = "ACDEFGHIKLMNOPQRSTUVWY-*";
string dnaAmbiguousStringExpected = "ACGT-MRSWYKVHDBN";
string rnaAmbiguousStringExpected = "ACGU-NMRSWYKVHDB";
string proteinAmbiguousStringExpected = "ACDEFGHIKLMNOPQRSTUVWY-*XZBJ";
Assert.AreEqual(dnaStringExpected, dnaStringActual);
Assert.AreEqual(rnaStringExpected, rnaStringActual);
Assert.AreEqual(proteinStringExpected, proteinStringActual);
Assert.AreEqual(dnaAmbiguousStringExpected, dnaAmbiguousStringActual);
Assert.AreEqual(rnaAmbiguousStringExpected, rnaAmbiguousStringActual);
Assert.AreEqual(proteinAmbiguousStringExpected, proteinAmbiguousStringActual);
}
public void ValidateAmbiguousProteinAplhabet()
{
AmbiguousProteinAlphabet proteinAlphabetInstance = AmbiguousProteinAlphabet.Instance;
Assert.AreEqual(proteinAlphabetInstance.X, (byte)'X');
Assert.AreEqual(proteinAlphabetInstance.Z, (byte)'Z');
Assert.AreEqual(proteinAlphabetInstance.B, (byte)'B');
Assert.AreEqual(proteinAlphabetInstance.J, (byte)'J');
ApplicationLog.WriteLine(string.Concat(@"Alphabets BVT: Validation of
Ambiguous Protein characters completed successfully."));
}
public void ValidateAllAlphabetsToString()
{
DnaAlphabet dna = DnaAlphabet.Instance;
RnaAlphabet rna = RnaAlphabet.Instance;
ProteinAlphabet protein = ProteinAlphabet.Instance;
AmbiguousDnaAlphabet dnaAmbiguous = AmbiguousDnaAlphabet.Instance;
AmbiguousRnaAlphabet rnaAmbiguous = AmbiguousRnaAlphabet.Instance;
AmbiguousProteinAlphabet proteinAmbiguous = AmbiguousProteinAlphabet.Instance;
string dnaStringActual = dna.ToString();
string rnaStringActual = rna.ToString();
string proteinStringActual = protein.ToString();
string dnaAmbiguousStringActual = dnaAmbiguous.ToString();
string rnaAmbiguousStringActual = rnaAmbiguous.ToString();
string proteinAmbiguousStringActual = proteinAmbiguous.ToString();
Assert.AreEqual("ACGT-", dnaStringActual);
Assert.AreEqual("ACGU-", rnaStringActual);
Assert.AreEqual("ACDEFGHIKLMNOPQRSTUVWY-*", proteinStringActual);
Assert.AreEqual("ACGT-MRSWYKVHDBN", dnaAmbiguousStringActual);
Assert.AreEqual("ACGU-NMRSWYKVHDB", rnaAmbiguousStringActual);
Assert.AreEqual("ACDEFGHIKLMNOPQRSTUVWY-*XZBJ", proteinAmbiguousStringActual);
}
