private void AddRetentionTimePredictor(LibraryManager.BuildState buildState)
{
var predictorName = Helpers.GetUniqueName(buildState.LibrarySpec.Name, Settings.Default.RetentionTimeList.Select(rt => rt.Name).ToArray());
using (var addPredictorDlg = new AddRetentionTimePredictorDlg(predictorName, buildState.LibrarySpec.FilePath, false))
{
if (addPredictorDlg.ShowDialog(TopMostApplicationForm) == DialogResult.OK)
{
Settings.Default.RTScoreCalculatorList.Add(addPredictorDlg.Calculator);
Settings.Default.RetentionTimeList.Add(addPredictorDlg.Regression);
NotificationContainer.ModifyDocument(Resources.LibraryBuildNotificationHandler_AddRetentionTimePredictor_Add_retention_time_predictor,
doc => doc.ChangeSettings(doc.Settings.ChangePeptidePrediction(predict =>
predict.ChangeRetentionTime(addPredictorDlg.Regression))));
}
}
}
public void OkDialog()
{
var helper = new MessageBoxHelper(this);
string name;
if (!helper.ValidateNameTextBox(textName, out name))
{
return;
}
// Allow updating the original modification
if (LibrarySpec == null || !Equals(name, LibrarySpec.Name))
{
// But not any other existing modification
foreach (LibrarySpec mod in _existing)
{
if (Equals(name, mod.Name))
{
helper.ShowTextBoxError(textName, Resources.EditLibraryDlg_OkDialog_The_library__0__already_exists, name);
return;
}
}
}
String path = textPath.Text;
if (!File.Exists(path))
{
MessageBox.Show(this, string.Format(Resources.EditLibraryDlg_OkDialog_The_file__0__does_not_exist, path), Program.Name);
textPath.Focus();
return;
}
if (FileEx.IsDirectory(path))
{
MessageBox.Show(this, string.Format(Resources.EditLibraryDlg_OkDialog_The_path__0__is_a_directory, path), Program.Name);
textPath.Focus();
return;
}
// Display an error message if the user is trying to add a BiblioSpec library,
// and the library has the text "redundant" in the file name.
if (path.EndsWith(BiblioSpecLiteSpec.EXT_REDUNDANT))
{
var message = TextUtil.LineSeparate(string.Format(Resources.EditLibraryDlg_OkDialog_The_file__0__appears_to_be_a_redundant_library, path),
Resources.EditLibraryDlg_OkDialog_Please_choose_a_non_redundant_library);
MessageDlg.Show(this, string.Format(message, path));
textPath.Focus();
return;
}
var librarySpec = LibrarySpec.CreateFromPath(name, path);
if (librarySpec == null)
{
MessageDlg.Show(this, string.Format(Resources.EditLibraryDlg_OkDialog_The_file__0__is_not_a_supported_spectral_library_file_format, path));
textPath.Focus();
return;
}
if (librarySpec is ChromatogramLibrarySpec)
{
using (var longWait = new LongWaitDlg {
Text = Resources.EditLibraryDlg_OkDialog_Loading_chromatogram_library
})
{
Library lib = null;
try
{
try
{
longWait.PerformWork(this, 800,
monitor => lib = librarySpec.LoadLibrary(new DefaultFileLoadMonitor(monitor)));
}
// ReSharper disable once EmptyGeneralCatchClause
catch
{
// Library failed to load
}
LibraryRetentionTimes libRts;
if (lib != null && lib.TryGetIrts(out libRts) &&
Settings.Default.RTScoreCalculatorList.All(calc => calc.PersistencePath != path))
{
using (var addPredictorDlg = new AddRetentionTimePredictorDlg(name, path))
{
switch (addPredictorDlg.ShowDialog(this))
{
case DialogResult.OK:
Settings.Default.RTScoreCalculatorList.Add(addPredictorDlg.Calculator);
Settings.Default.RetentionTimeList.Add(addPredictorDlg.Regression);
Settings.Default.Save();
break;
case DialogResult.No:
break;
default:
return;
}
}
}
}
finally
{
if (null != lib)
{
foreach (var pooledStream in lib.ReadStreams)
{
pooledStream.CloseStream();
}
}
}
}
}
_librarySpec = librarySpec;
DialogResult = DialogResult.OK;
Close();
}
public void OkDialog()
{
var helper = new MessageBoxHelper(this);
string name;
if (!helper.ValidateNameTextBox(textName, out name))
{
return;
}
// Allow updating the original modification
if (LibrarySpec == null || !Equals(name, LibrarySpec.Name))
{
// But not any other existing modification
foreach (LibrarySpec mod in _existing)
{
if (Equals(name, mod.Name))
{
helper.ShowTextBoxError(textName, Resources.EditLibraryDlg_OkDialog_The_library__0__already_exists, name);
return;
}
}
}
String path = textPath.Text;
if (!ValidateLibraryPath(this, path))
{
textPath.Focus();
return;
}
var librarySpec = LibrarySpec.CreateFromPath(name, path);
if (librarySpec == null)
{
MessageDlg.Show(this, string.Format(Resources.EditLibraryDlg_OkDialog_The_file__0__is_not_a_supported_spectral_library_file_format, path));
textPath.Focus();
return;
}
librarySpec = librarySpec.ChangeUseExplicitPeakBounds(cbxUseExplicitPeakBounds.Checked);
if (librarySpec is ChromatogramLibrarySpec)
{
using (var longWait = new LongWaitDlg {
Text = Resources.EditLibraryDlg_OkDialog_Loading_chromatogram_library
})
{
Library lib = null;
try
{
try
{
longWait.PerformWork(this, 800,
monitor => lib = librarySpec.LoadLibrary(new DefaultFileLoadMonitor(monitor)));
}
// ReSharper disable once EmptyGeneralCatchClause
catch
{
// Library failed to load
}
LibraryRetentionTimes libRts;
if (lib != null && lib.TryGetIrts(out libRts) &&
Settings.Default.RTScoreCalculatorList.All(calc => calc.PersistencePath != path))
{
using (var addPredictorDlg = new AddRetentionTimePredictorDlg(name, path, true))
{
switch (addPredictorDlg.ShowDialog(this))
{
case DialogResult.OK:
Settings.Default.RTScoreCalculatorList.Add(addPredictorDlg.Calculator);
Settings.Default.RetentionTimeList.Add(addPredictorDlg.Regression);
break;
case DialogResult.No:
break;
default:
return;
}
}
}
}
finally
{
if (null != lib)
{
foreach (var pooledStream in lib.ReadStreams)
{
pooledStream.CloseStream();
}
}
}
}
}
_librarySpec = librarySpec;
DialogResult = DialogResult.OK;
Close();
}
public void OkDialog()
{
var helper = new MessageBoxHelper(this);
string name;
if (!helper.ValidateNameTextBox(textName, out name))
return;
// Allow updating the original modification
if (LibrarySpec == null || !Equals(name, LibrarySpec.Name))
{
// But not any other existing modification
foreach (LibrarySpec mod in _existing)
{
if (Equals(name, mod.Name))
{
helper.ShowTextBoxError(textName, Resources.EditLibraryDlg_OkDialog_The_library__0__already_exists, name);
return;
}
}
}
String path = textPath.Text;
if (!File.Exists(path))
{
MessageBox.Show(this, string.Format(Resources.EditLibraryDlg_OkDialog_The_file__0__does_not_exist, path), Program.Name);
textPath.Focus();
return;
}
if (FileEx.IsDirectory(path))
{
MessageBox.Show(this, string.Format(Resources.EditLibraryDlg_OkDialog_The_path__0__is_a_directory, path), Program.Name);
textPath.Focus();
return;
}
// Display an error message if the user is trying to add a BiblioSpec library,
// and the library has the text "redundant" in the file name.
if (path.EndsWith(BiblioSpecLiteSpec.EXT_REDUNDANT))
{
var message = TextUtil.LineSeparate(string.Format(Resources.EditLibraryDlg_OkDialog_The_file__0__appears_to_be_a_redundant_library, path),
Resources.EditLibraryDlg_OkDialog_Please_choose_a_non_redundant_library);
MessageDlg.Show(this, string.Format(message, path));
textPath.Focus();
return;
}
var librarySpec = LibrarySpec.CreateFromPath(name, path);
if (librarySpec == null)
{
MessageDlg.Show(this, string.Format(Resources.EditLibraryDlg_OkDialog_The_file__0__is_not_a_supported_spectral_library_file_format, path));
textPath.Focus();
return;
}
if (librarySpec is ChromatogramLibrarySpec)
{
using (var longWait = new LongWaitDlg{ Text = Resources.EditLibraryDlg_OkDialog_Loading_chromatogram_library })
{
Library lib = null;
try
{
try
{
longWait.PerformWork(this, 800,
monitor => lib = librarySpec.LoadLibrary(new DefaultFileLoadMonitor(monitor)));
}
// ReSharper disable once EmptyGeneralCatchClause
catch
{
// Library failed to load
}
LibraryRetentionTimes libRts;
if (lib != null && lib.TryGetIrts(out libRts) &&
Settings.Default.RTScoreCalculatorList.All(calc => calc.PersistencePath != path))
{
using (var addPredictorDlg = new AddRetentionTimePredictorDlg(name, path))
{
switch (addPredictorDlg.ShowDialog(this))
{
case DialogResult.OK:
Settings.Default.RTScoreCalculatorList.Add(addPredictorDlg.Calculator);
Settings.Default.RetentionTimeList.Add(addPredictorDlg.Regression);
Settings.Default.Save();
break;
case DialogResult.No:
break;
default:
return;
}
}
}
}
finally
{
if (null != lib)
{
foreach (var pooledStream in lib.ReadStreams)
{
pooledStream.CloseStream();
}
}
}
}
}
_librarySpec = librarySpec;
DialogResult = DialogResult.OK;
Close();
}
