public override bool Equals(object obj)
{
if (ReferenceEquals(this, obj))
{
return(true);
}
SrmTransition transition = obj as SrmTransition;
return(transition != null &&
transition.PrecursorCharge == PrecursorCharge &&
transition.Charge == Charge &&
Equals(transition._fragment, _fragment));
}
public XmlTransition(SrmTransition transition)
{
FragmentType = transition.Fragment.IType;
FragmentOrdinal = transition.Fragment.Ordinal;
NeutralMass = SequenceMassCalc.PersistentNeutral(transition.Fragment.MassH);
PrecursorCharge = transition.PrecursorCharge;
ProductCharge = transition.Charge;
PrecursorMz = SequenceMassCalc.PersistentMZ(transition.PrecursorMZ);
ProductMz = SequenceMassCalc.PersistentMZ(transition.MZ);
CollisionEnergy = Math.Round(transition.CollisionEnergy, 6);
if (transition.DeclusteringPotential.HasValue)
{
DeclusteringPotential = Math.Round(transition.DeclusteringPotential.Value, 6);
}
PepV01 peptide = transition.Fragment.Peptide;
if (peptide.PredictedRetentionTime.HasValue && transition.RetentionTimeWindow > 0)
{
double start = Math.Round(peptide.PredictedRetentionTime.Value - transition.RetentionTimeWindow / 2, 2);
StartRT = start;
StopRT = Math.Round(start + transition.RetentionTimeWindow, 2);
}
}
public XmlTransition(SrmTransition transition)
{
FragmentType = transition.Fragment.IType;
FragmentOrdinal = transition.Fragment.Ordinal;
NeutralMass = SequenceMassCalc.PersistentNeutral(transition.Fragment.MassH);
PrecursorCharge = transition.PrecursorCharge;
ProductCharge = transition.Charge;
PrecursorMz = SequenceMassCalc.PersistentMZ(transition.PrecursorMZ);
ProductMz = SequenceMassCalc.PersistentMZ(transition.MZ);
CollisionEnergy = Math.Round(transition.CollisionEnergy, 6);
if (transition.DeclusteringPotential.HasValue)
DeclusteringPotential = Math.Round(transition.DeclusteringPotential.Value, 6);
PepV01 peptide = transition.Fragment.Peptide;
if (peptide.PredictedRetentionTime.HasValue && transition.RetentionTimeWindow > 0)
{
double start = Math.Round(peptide.PredictedRetentionTime.Value - transition.RetentionTimeWindow/2, 2);
StartRT = start;
StopRT = Math.Round(start + transition.RetentionTimeWindow, 2);
}
}
