public static ResultNameMap <RetentionTimeSource> ListAvailableRetentionTimeSources(SrmSettings settings)
{
if (!settings.TransitionSettings.FullScan.IsEnabled)
{
return(ResultNameMap <RetentionTimeSource> .EMPTY);
}
IEnumerable <RetentionTimeSource> sources = new RetentionTimeSource[0];
foreach (var library in settings.PeptideSettings.Libraries.Libraries)
{
if (library == null || !library.IsLoaded)
{
continue;
}
sources = sources.Concat(library.ListRetentionTimeSources());
}
return(ResultNameMap.FromNamedElements(sources));
}
private static IDictionary<string, double> GetFirstRetentionTimes(
SrmSettings settings, RetentionTimeSource retentionTimeSource)
{
var libraryRetentionTimes = settings.GetRetentionTimes(MsDataFileUri.Parse(retentionTimeSource.Name));
if (null == libraryRetentionTimes)
{
return new Dictionary<string, double>();
}
return libraryRetentionTimes.GetFirstRetentionTimes();
}
public DataRow(SrmSettings settings, RetentionTimeSource target, RetentionTimeSource timesToAlign)
: this()
{
DocumentRetentionTimes = settings.DocumentRetentionTimes;
Target = target;
Source = timesToAlign;
Assume.IsNotNull(target, "target"); // Not L10N
Assume.IsNotNull(DocumentRetentionTimes.FileAlignments, "DocumentRetentionTimes.FileAlignments"); // Not L10N
var fileAlignment = DocumentRetentionTimes.FileAlignments.Find(target.Name);
if (fileAlignment != null)
{
Assume.IsNotNull(fileAlignment.RetentionTimeAlignments, "fileAlignment.RetentionTimeAlignments"); // Not L10N
Assume.IsNotNull(Source, "Source"); // Not L10N
Alignment = fileAlignment.RetentionTimeAlignments.Find(Source.Name);
}
TargetTimes = GetFirstRetentionTimes(settings, target);
SourceTimes = GetFirstRetentionTimes(settings, timesToAlign);
}
public DataFileKey(RetentionTimeSource retentionTimeSource)
: this()
{
RetentionTimeSource = retentionTimeSource;
}
public bool Equals(RetentionTimeSource other)
{
if (ReferenceEquals(null, other)) return false;
if (ReferenceEquals(this, other)) return true;
return base.Equals(other) && Equals(other.Library, Library);
}
public static ResultNameMap<RetentionTimeSource> ListAvailableRetentionTimeSources(SrmSettings settings)
{
if (!settings.TransitionSettings.FullScan.IsEnabled)
{
return ResultNameMap<RetentionTimeSource>.EMPTY;
}
IEnumerable<RetentionTimeSource> sources = new RetentionTimeSource[0];
foreach (var library in settings.PeptideSettings.Libraries.Libraries)
{
if (library == null || !library.IsLoaded)
{
continue;
}
sources = sources.Concat(library.ListRetentionTimeSources());
}
return ResultNameMap.FromNamedElements(sources);
}