private void filter_btn_clk(object sender, RoutedEventArgs e)
{
string ac = protein_filter_AC_tb.Text;
string de = protein_filter_DE_tb.Text;
string group = protein_filter_Group_tb.Text;
int pep_number = 0, sq_number = 0;
int target_index = this.target_comboBox.SelectedIndex;
bool is_con = (bool)this.con_need_cbx.IsChecked;
if (protein_peptide_number_tb.Text == "")
{
pep_number = 0;
}
else
{
if (!Config_Help.IsIntegerAllowed(protein_peptide_number_tb.Text))
{
MessageBox.Show(Message_Help.PROTEIN_PEP_NUMBER);
return;
}
else
{
pep_number = int.Parse(protein_peptide_number_tb.Text);
}
}
if (protein_sq_number_tb.Text == "")
{
sq_number = 0;
}
else
{
if (!Config_Help.IsIntegerAllowed(protein_sq_number_tb.Text))
{
MessageBox.Show(Message_Help.PROTEIN_PEP_NUMBER);
return;
}
else
{
sq_number = int.Parse(protein_sq_number_tb.Text);
}
}
ObservableCollection <Protein> proteins = mainW.protein_panel.identification_proteins;
proteins = filter_by_AC(ac, proteins);
proteins = filter_by_DE(de, proteins);
proteins = filter_by_Group(group, proteins);
proteins = filter_by_Pep_number(pep_number, proteins);
proteins = filter_by_Sq_number(sq_number, proteins);
proteins = filter_byTarget(target_index, proteins);
proteins = filter_byContaminant(is_con, proteins);
mainW.protein_data.ItemsSource = proteins;
mainW.display_size.Text = proteins.Count.ToString();
this.Close();
}
private void filter_btn(object sender, RoutedEventArgs e)
{
try
{
string title_str = this.title_subStr_txt.Text;
int title_regular_flag = this.title_cbb.SelectedIndex;
string sq_str = this.sq_subStr_txt.Text;
int sq_regular_flag = this.sq_cbb.SelectedIndex;
ComboBoxItem selected_item = (ComboBoxItem)this.mods_comboBox.SelectedItem;
ComboBoxItem selected_item_flag = (ComboBoxItem)this.mods_comboBox2.SelectedItem;
string mod_name = selected_item.Content.ToString();
string mod_name1 = mod_name;
string mod_flag = selected_item_flag.Content.ToString();
if (mod_name == "Show All")
{
mod_name = "";
}
if (mod_flag != "Show All")
{
int index = 0;
for (int i = 0; i < Config_Help.mod_label_name.Count(); ++i)
{
if (Config_Help.mod_label_name[i] == mod_flag)
{
index = i;
break;
}
}
mod_name = mod_name + "#" + index;
}
ComboBoxItem selected_item2 = (ComboBoxItem)this.specific_comboBox.SelectedItem;
string specific_name = selected_item2.Content.ToString();
if (this.filter_mix_num.Text != "" && !Config_Help.IsIntegerAllowed(this.filter_mix_num.Text))
{
MessageBox.Show(Message_Help.MIXED_NUMBER_BE_INTEGER);
return;
}
int mix_num = 0;
if (this.filter_mix_num.Text != "")
{
mix_num = int.Parse(this.filter_mix_num.Text);
}
if (this.ratio_tbx.Text != "" && !Config_Help.IsDecimalAllowed(this.ratio_tbx.Text) &&
this.ratio_tbx2.Text != "" && !Config_Help.IsDecimalAllowed(this.ratio_tbx2.Text))
{
MessageBox.Show(Message_Help.RATIO_NUMBER_BE_DOUBLE);
return;
}
ComboBoxItem selected_item3 = (ComboBoxItem)this.label_comboBox.SelectedItem;
string label_name = selected_item3.Content.ToString();
string label_name1 = label_name;
if (label_name == "Show All")
{
label_name = "";
}
double ratio = 1024.0;
double ratio2 = 0.0;
double sigma = 1.0;
double sigma2 = 0.0;
if (this.ratio_tbx.Text != "")
{
ratio = double.Parse(this.ratio_tbx.Text);
}
if (this.ratio_tbx2.Text != "")
{
ratio2 = double.Parse(this.ratio_tbx2.Text);
}
if (this.sigma_tbx.Text != "")
{
sigma = double.Parse(this.sigma_tbx.Text);
}
if (this.sigma_tbx2.Text != "")
{
sigma2 = double.Parse(this.sigma_tbx2.Text);
}
ObservableCollection <PSM> display_psms = new ObservableCollection <PSM>();
ObservableCollection <PSM> all_psms = new ObservableCollection <PSM>();
if (!(bool)mainW.other_psms_cbx.IsChecked)
{
all_psms = mainW.psms;
}
else
{
for (int i = 0; i < mainW.all_psms.Count; ++i)
{
if (mainW.all_psms[i].Q_value > Config_Help.fdr_value)
{
all_psms.Add(mainW.all_psms[i]);
}
}
}
ComboBoxItem selected_item_target = (ComboBoxItem)this.target_comboBox.SelectedItem;
string target_string = selected_item_target.Content.ToString();
int target_index = 0;
if (target_string == "Show All")
{
target_index = 0;
}
else if (target_string == "Target")
{
target_index = 1;
}
else if (target_string == "Decoy")
{
target_index = 2;
}
display_psms = filter_byTarget(target_index, all_psms);
display_psms = filter_bySQ_or_Title(title_str, 0, display_psms, title_regular_flag);
display_psms = filter_bySQ_or_Title(sq_str, 1, display_psms, sq_regular_flag);
display_psms = filter_byMod(mod_name, display_psms);
display_psms = filter_bySpecific(specific_name, display_psms);
display_psms = filter_byLabelName(label_name, display_psms);
display_psms = filter_byRatio_Less(ratio, display_psms);
display_psms = filter_byRatio_Bigger(ratio2, display_psms);
display_psms = filter_bySigma_Less(sigma, display_psms);
display_psms = filter_bySigma_Bigger(sigma2, display_psms);
display_psms = filter_byContaminant((bool)this.con_need_cbx.IsChecked, display_psms);
display_psms = filter_byUnqiue((bool)this.unique_cbx.IsChecked, display_psms);
display_psms = filter_byMix_Bigger(mix_num, display_psms);
mainW.display_psms = display_psms;
mainW.data.ItemsSource = display_psms;
mainW.display_size.Text = display_psms.Count.ToString();
Config_Help.psm_filter_bean = new PSM_Filter_Bean(mix_num, title_str, title_regular_flag, sq_str, sq_regular_flag, mod_name1, mod_flag, specific_name, label_name1, target_string,
(bool)this.con_need_cbx.IsChecked, (bool)this.unique_cbx.IsChecked, ratio, ratio2, sigma, sigma2);
//this.Close();
}
catch (Exception exe)
{
MessageBox.Show(exe.ToString());
}
}
