public void setUp()
{
P = new Parameter(1,2);
if (P == null);
{
}
}
public void test_KineticLaw_getParameterById()
{
Parameter k1 = new Parameter(2,4);
Parameter k2 = new Parameter(2,4);
k1.setId( "k1");
k2.setId( "k2");
k1.setValue(3.14);
k2.setValue(2.72);
M.addParameter(k1);
M.addParameter(k2);
Reaction r1 = new Reaction(2,4);
r1.setId( "reaction_1" );
KineticLaw kl = new KineticLaw(2,4);
kl.setFormula( "k1 * X0");
Parameter k3 = new Parameter(2,4);
Parameter k4 = new Parameter(2,4);
k3.setId( "k1");
k4.setId( "k2");
k3.setValue(2.72);
k4.setValue(3.14);
kl.addParameter(k3);
kl.addParameter(k4);
r1.setKineticLaw(kl);
M.addReaction(r1);
KineticLaw kl1 = M.getReaction(0).getKineticLaw();
assertNotEquals(kl1.getParameter( "k1" ),k3);
assertNotEquals(kl1.getParameter( "k1" ),k1);
assertNotEquals(kl1.getParameter( "k2" ),k4);
assertEquals(kl1.getParameter( "k3" ),null);
}
public void test_Parameter_setConstant2()
{
Parameter p = new Parameter(2,2);
int i = p.setConstant(false);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( p.getConstant() == false );
p = null;
}
public void test_KineticLaw_addParameter()
{
Parameter p = new Parameter(2,4);
p.setId( "p");
kl.addParameter(p);
assertTrue( kl.getNumParameters() == 1 );
p = null;
}
public void test_KineticLaw_addParameter2()
{
KineticLaw kl = new KineticLaw(2,2);
Parameter p = new Parameter(2,1);
p.setId( "p");
int i = kl.addParameter(p);
assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH );
assertTrue( kl.getNumParameters() == 0 );
p = null;
kl = null;
}
public void test_KineticLaw_addParameter1()
{
KineticLaw kl = new KineticLaw(2,2);
Parameter p = new Parameter(2,2);
int i = kl.addParameter(p);
assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT );
p.setId( "p");
i = kl.addParameter(p);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( kl.getNumParameters() == 1 );
p = null;
kl = null;
}
public void test_Parameter_createWithNS()
{
XMLNamespaces xmlns = new XMLNamespaces();
xmlns.add( "http://www.sbml.org", "testsbml");
SBMLNamespaces sbmlns = new SBMLNamespaces(2,1);
sbmlns.addNamespaces(xmlns);
Parameter object1 = new Parameter(sbmlns);
assertTrue( object1.getTypeCode() == libsbml.SBML_PARAMETER );
assertTrue( object1.getMetaId() == "" );
assertTrue( object1.getNotes() == null );
assertTrue( object1.getAnnotation() == null );
assertTrue( object1.getLevel() == 2 );
assertTrue( object1.getVersion() == 1 );
assertTrue( object1.getNamespaces() != null );
assertTrue( object1.getNamespaces().getLength() == 2 );
object1 = null;
}
public void test_Parameter_setValue2()
{
Parameter p = new Parameter(2,2);
int i = p.unsetValue();
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertEquals( false, p.isSetValue() );
p = null;
}
public void test_Model_getParameterById()
{
Parameter p1 = new Parameter(2,4);
Parameter p2 = new Parameter(2,4);
p1.setId( "Km1" );
p2.setId( "Km2" );
M.addParameter(p1);
M.addParameter(p2);
assertTrue( M.getNumParameters() == 2 );
assertNotEquals(M.getParameter( "Km1" ),p1);
assertNotEquals(M.getParameter( "Km2" ),p2);
assertEquals(M.getParameter( "Km3" ),null);
}
public void test_Parameter_parent_add()
{
Parameter ia = new Parameter(2,4);
Model m = new Model(2,4);
ia.setId("p");
m.addParameter(ia);
ia = null;
ListOf lo = m.getListOfParameters();
assertTrue( lo == m.getParameter(0).getParentSBMLObject() );
assertTrue( m == lo.getParentSBMLObject() );
}
public void test_Parameter_setName3()
{
Parameter p = new Parameter(1,2);
int i = p.setName( "11pp");
assertTrue( i == libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE );
assertEquals( false, p.isSetName() );
i = p.setName("");
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertEquals( false, p.isSetName() );
p = null;
}
internal static HandleRef getCPtr(Parameter obj)
{
return (obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr;
}
public void test_KineticLaw_Parameter_parent_add()
{
KineticLaw kl = new KineticLaw(2,4);
Parameter p = new Parameter(2,4);
p.setId("jake");
kl.addParameter(p);
p = null;
assertTrue( kl.getNumParameters() == 1 );
assertTrue( kl.getParameter(0).getId() == "jake" );
ListOfParameters lop = kl.getListOfParameters();
assertTrue( kl == lop.getParentSBMLObject() );
assertTrue( lop == kl.getParameter(0).getParentSBMLObject() );
kl = null;
}
public void test_Parameter_constructor()
{
SBase s;
try
{
s = new Parameter(1,1);
s = new Parameter(1,2);
s = new Parameter(2,1);
s = new Parameter(2,2);
s = new Parameter(2,3);
s = new Parameter(2,4);
s = new Parameter(3,1);
s = new Parameter(SN11);
s = new Parameter(SN12);
s = new Parameter(SN21);
s = new Parameter(SN22);
s = new Parameter(SN23);
s = new Parameter(SN24);
s = new Parameter(SN31);
}
catch (SBMLConstructorException e)
{
s = null;
}
assertTrue(s != null);
string msg = "";
try
{
s = new Parameter(9,9);
}
catch (SBMLConstructorException e)
{
msg = e.Message;
}
assertTrue(msg == ErrMsg);
msg = "";
try
{
s = new Parameter(SN99);
}
catch (SBMLConstructorException e)
{
msg = e.Message;
}
assertTrue(msg == ErrMsg);
}
public void test_KineticLaw_getParameterById()
{
Parameter k1 = new Parameter(2,4);
Parameter k2 = new Parameter(2,4);
k1.setId( "k1");
k2.setId( "k2");
k1.setValue(3.14);
k2.setValue(2.72);
kl.addParameter(k1);
kl.addParameter(k2);
k1 = null;
k2 = null;
assertTrue( kl.getNumParameters() == 2 );
k1 = kl.getParameter( "k1");
k2 = kl.getParameter( "k2");
assertTrue(( "k1" == k1.getId() ));
assertTrue(( "k2" == k2.getId() ));
assertTrue( k1.getValue() == 3.14 );
assertTrue( k2.getValue() == 2.72 );
}
public void test_Model_addParameter5()
{
Model m = new Model(2,2);
Parameter p = new Parameter(2,2);
p.setId( "p");
Parameter p1 = new Parameter(2,2);
p1.setId( "p");
int i = m.addParameter(p);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( m.getNumParameters() == 1 );
i = m.addParameter(p1);
assertTrue( i == libsbml.LIBSBML_DUPLICATE_OBJECT_ID );
assertTrue( m.getNumParameters() == 1 );
p = null;
p1 = null;
m = null;
}
/**
* Adds a copy of the given Parameter object to the list of local
* parameters in this KineticLaw.
*
* @param p the Parameter to add
*
* *
* @return integer value indicating success/failure of the
* function. @if clike The value is drawn from the
* enumeration #OperationReturnValues_t. @endif The possible values
* returned by this function are:
*
*
* @li @link libsbml#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink
* @li @link libsbml#LIBSBML_LEVEL_MISMATCH LIBSBML_LEVEL_MISMATCH@endlink
* @li @link libsbml#LIBSBML_VERSION_MISMATCH LIBSBML_VERSION_MISMATCH@endlink
* @li @link libsbml#LIBSBML_DUPLICATE_OBJECT_ID LIBSBML_DUPLICATE_OBJECT_ID@endlink
* @li @link libsbml#LIBSBML_INVALID_OBJECT LIBSBML_INVALID_OBJECT@endlink
* @li @link libsbml#LIBSBML_OPERATION_FAILED LIBSBML_OPERATION_FAILED@endlink
*
* *
* @note This method should be used with some caution. The fact that this
* method @em copies the object passed to it means that the caller will be
* left holding a physically different object instance than the one contained
* inside this object. Changes made to the original object instance (such as
* resetting attribute values) will <em>not affect the instance in this
* object</em>. In addition, the caller should make sure to free the
* original object if it is no longer being used, or else a memory leak will
* result. Please see other methods on this class (particularly a
* corresponding method whose name begins with the word <code>create</code>)
* for alternatives that do not lead to these issues.
*
*
*
* @see createParameter()
*/
public int addParameter(Parameter p)
{
int ret = libsbmlPINVOKE.KineticLaw_addParameter(swigCPtr, Parameter.getCPtr(p));
return ret;
}
public void test_Model_addParameter3()
{
Model m = new Model(2,2);
Parameter p = new Parameter(1,2);
p.setId( "p");
int i = m.addParameter(p);
assertTrue( i == libsbml.LIBSBML_LEVEL_MISMATCH );
assertTrue( m.getNumParameters() == 0 );
p = null;
m = null;
}
public void test_Model_addParameter1()
{
Model m = new Model(2,2);
Parameter p = new Parameter(2,2);
int i = m.addParameter(p);
assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT );
p.setId( "p");
i = m.addParameter(p);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( m.getNumParameters() == 1 );
p = null;
m = null;
}
public void test_Model_addParameter()
{
Parameter p = new Parameter(2,4);
p.setId( "p");
M.addParameter(p);
assertTrue( M.getNumParameters() == 1 );
}
public void tearDown()
{
P = null;
}
public void test_internal_consistency_check_99904_param()
{
SBMLDocument d = new SBMLDocument(2,4);
long errors;
Parameter p = new Parameter(2,4);
d.setLevelAndVersion(1,2,false);
Model m = d.createModel();
Compartment c = m.createCompartment();
c.setId("cc");
p.setId("p");
p.setMetaId("mmm");
m.addParameter(p);
errors = d.checkInternalConsistency();
assertTrue( errors == 0 );
d = null;
}
public void test_Model_getParameter()
{
Parameter p1 = new Parameter(2,4);
Parameter p2 = new Parameter(2,4);
p1.setId( "Km1");
p2.setId( "Km2");
M.addParameter(p1);
M.addParameter(p2);
assertTrue( M.getNumParameters() == 2 );
p1 = M.getParameter(0);
p2 = M.getParameter(1);
assertTrue(( "Km1" == p1.getId() ));
assertTrue(( "Km2" == p2.getId() ));
}
public void test_L3_Parameter_createWithNS()
{
XMLNamespaces xmlns = new XMLNamespaces();
xmlns.add( "http://www.sbml.org", "testsbml");
SBMLNamespaces sbmlns = new SBMLNamespaces(3,1);
sbmlns.addNamespaces(xmlns);
Parameter p = new Parameter(sbmlns);
assertTrue( p.getTypeCode() == libsbml.SBML_PARAMETER );
assertTrue( p.getMetaId() == "" );
assertTrue( p.getNotes() == null );
assertTrue( p.getAnnotation() == null );
assertTrue( p.getLevel() == 3 );
assertTrue( p.getVersion() == 1 );
assertTrue( p.getNamespaces() != null );
assertTrue( p.getNamespaces().getLength() == 2 );
assertTrue( p.getId() == "" );
assertTrue( p.getName() == "" );
assertTrue( p.getUnits() == "" );
assertEquals( true, isnan(p.getValue()) );
assertTrue( p.getConstant() == true );
assertEquals( false, p.isSetId() );
assertEquals( false, p.isSetName() );
assertEquals( false, p.isSetValue() );
assertEquals( false, p.isSetUnits() );
assertEquals( false, p.isSetConstant() );
p = null;
}
public void test_KineticLaw_Parameter_ancestor_add()
{
KineticLaw kl = new KineticLaw(2,4);
Parameter p = new Parameter(2,4);
p.setId("jake");
kl.addParameter(p);
p = null;
ListOfParameters lop = kl.getListOfParameters();
Parameter obj = kl.getParameter(0);
assertTrue( obj.getAncestorOfType(libsbml.SBML_KINETIC_LAW) == kl );
assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lop );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
kl = null;
}
internal static HandleRef getCPtrAndDisown(Parameter obj)
{
HandleRef ptr = new HandleRef(null, IntPtr.Zero);
if (obj != null)
{
ptr = obj.swigCPtr;
obj.swigCMemOwn = false;
}
return ptr;
}
public void test_Parameter()
{
Parameter p = new Parameter(2,4);
assertEquals( true, p.hasRequiredElements() );
p = null;
}
public void test_Parameter_ancestor_add()
{
Parameter ia = new Parameter(2,4);
Model m = new Model(2,4);
ia.setId("p");
m.addParameter(ia);
ia = null;
ListOf lo = m.getListOfParameters();
Parameter obj = m.getParameter(0);
assertTrue( obj.getAncestorOfType(libsbml.SBML_MODEL) == m );
assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == null );
}
/**
* Copy constructor; creates a LocalParameter object by copying
* the attributes of a given Parameter object.
*
* @param orig the Parameter instance to copy.
*
* @throws SBMLConstructorException
* Thrown if the argument @p orig is @c null.
*/
public LocalParameter(Parameter orig)
: this(libsbmlPINVOKE.new_LocalParameter__SWIG_3(Parameter.getCPtr(orig)), true)
{
if (libsbmlPINVOKE.SWIGPendingException.Pending) throw libsbmlPINVOKE.SWIGPendingException.Retrieve();
}
public void test_L3_Parameter_hasRequiredAttributes()
{
Parameter p = new Parameter(3,1);
assertEquals( false, p.hasRequiredAttributes() );
p.setId( "id");
assertEquals( false, p.hasRequiredAttributes() );
p.setConstant(false);
assertEquals( true, p.hasRequiredAttributes() );
p = null;
}