protected override void Because()
{
var sbmlModel = new Model(3, 1);
//Event
var sbmlEvent = sbmlModel.createEvent();
sbmlEvent.setId("e1");
sbmlEvent.setName("e1_name");
sbmlEvent.setNotes("eventNotes");
//Trigger
var trigger = sbmlModel.createTrigger();
trigger.setMath(libsbml.parseFormula("1 > 0 "));
sbmlEvent.setTrigger(trigger);
//Event Assignment
var assign = new EventAssignment(3, 1);
assign.setId("ea1");
assign.setName("ea1_name");
assign.setVariable("x1");
assign.setMath(libsbml.parseFormula("1+2"));
sbmlEvent.addEventAssignment(assign);
sbmlModel.addEvent(sbmlEvent);
sut.DoImport(sbmlModel, new MoBiProject(), A.Fake <SBMLInformation>(), new MoBiMacroCommand());
}
public void setUp()
{
EA = new EventAssignment(2,4);
if (EA == null);
{
}
}
/// <summary>
/// Creates the Mobi Event Assignment for one SBML Event Assignment.
/// </summary>
internal void CreateEventAssignment(EventAssignment eventAssignment)
{
_counter++;
var assignmentVar = eventAssignment.getVariable();
var alias = _sbmlInformation.AliasCreator.CreateAliasFrom(assignmentVar) + _counter;
var description = String.Empty;
if (eventAssignment.isSetNotes())
{
description += eventAssignment.getNotesString();
}
if (eventAssignment.isSetSBOTerm())
{
description += (SBMLConstants.SPACE + eventAssignment.getSBOTerm());
}
IEventAssignmentBuilder eab = new EventAssignmentBuilder()
.WithId(eventAssignment.getId() + SBMLConstants.SPACE + eventAssignment.getName() + SBMLConstants.SPACE + alias)
.WithName(SBMLConstants.SBML_EVENT_ASSIGNMENT + eventAssignment.getId())
.WithDescription(description);
var formula = _astHandler.Parse(eventAssignment.getMath(), eab, assignmentVar, _sbmlProject, _sbmlInformation) ??
ObjectBaseFactory.Create <ExplicitFormula>().WithFormulaString(String.Empty).WithName(SBMLConstants.DEFAULT_FORMULA_NAME);
eab.Formula = formula;
EventGroupBuildingBlock.FormulaCache.Add(formula);
EventBuilder.AddAssignment(eab);
}
internal static HandleRef getCPtrAndDisown(EventAssignment obj)
{
HandleRef ptr = new HandleRef(null, IntPtr.Zero);
if (obj != null)
{
ptr = obj.swigCPtr;
obj.swigCMemOwn = false;
}
return(ptr);
}
public void test_Event_addEventAssignment2()
{
Event e = new Event(2,2);
EventAssignment ea = new EventAssignment(2,3);
ea.setVariable( "f");
ea.setMath(libsbml.parseFormula("a-n"));
int i = e.addEventAssignment(ea);
assertTrue( i == libsbml.LIBSBML_VERSION_MISMATCH );
assertTrue( e.getNumEventAssignments() == 0 );
ea = null;
e = null;
}
private static void printEventAssignmentMath(int n, EventAssignment ea)
{
string variable;
string formula;
if (ea.isSetMath())
{
variable = ea.getVariable();
formula = libsbml.formulaToString(ea.getMath());
Console.Write(" EventAssignment " + n
+ ", trigger: " + variable + " = " + formula + Environment.NewLine);
}
}
public void test_Event_addEventAssignment1()
{
Event e = new Event(2,2);
EventAssignment ea = new EventAssignment(2,2);
int i = e.addEventAssignment(ea);
assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT );
ea.setVariable( "f");
i = e.addEventAssignment(ea);
assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT );
ea.setMath(libsbml.parseFormula("a-n"));
i = e.addEventAssignment(ea);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( e.getNumEventAssignments() == 1 );
ea = null;
e = null;
}
public void test_EventAssignment_createWithNS()
{
XMLNamespaces xmlns = new XMLNamespaces();
xmlns.add( "http://www.sbml.org", "testsbml");
SBMLNamespaces sbmlns = new SBMLNamespaces(2,1);
sbmlns.addNamespaces(xmlns);
EventAssignment object1 = new EventAssignment(sbmlns);
assertTrue( object1.getTypeCode() == libsbml.SBML_EVENT_ASSIGNMENT );
assertTrue( object1.getMetaId() == "" );
assertTrue( object1.getNotes() == null );
assertTrue( object1.getAnnotation() == null );
assertTrue( object1.getLevel() == 2 );
assertTrue( object1.getVersion() == 1 );
assertTrue( object1.getNamespaces() != null );
assertTrue( object1.getNamespaces().getLength() == 2 );
object1 = null;
}
internal static HandleRef getCPtr(EventAssignment obj)
{
return (obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr;
}
public void test_Event_full()
{
ASTNode math1 = libsbml.parseFormula("0");
Trigger trigger = new Trigger(2,4);
ASTNode math = libsbml.parseFormula("0");
Event e = new Event(2,4);
EventAssignment ea = new EventAssignment(2,4);
ea.setVariable( "k");
ea.setMath(math);
trigger.setMath(math1);
e.setTrigger(trigger);
e.setId( "e1");
e.setName( "Set k2 to zero when P1 <= t");
e.addEventAssignment(ea);
assertTrue( e.getNumEventAssignments() == 1 );
assertNotEquals(e.getEventAssignment(0),ea);
math = null;
e = null;
}
/**
* Appends a copy of the given EventAssignment to this Event.
*
* @param ea the EventAssignment object to add.
*
* @return integer value indicating success/failure of the
* function. @if clike The value is drawn from the
* enumeration #OperationReturnValues_t. @endif The possible values
* returned by this function are:
* @li @link libsbmlcs#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS@endlink
* @li @link libsbmlcs#LIBSBML_LEVEL_MISMATCH LIBSBML_LEVEL_MISMATCH@endlink
* @li @link libsbmlcs#LIBSBML_VERSION_MISMATCH LIBSBML_VERSION_MISMATCH@endlink
* @li @link libsbmlcs#LIBSBML_DUPLICATE_OBJECT_ID LIBSBML_DUPLICATE_OBJECT_ID@endlink
* @li @link libsbmlcs#LIBSBML_OPERATION_FAILED LIBSBML_OPERATION_FAILED@endlink
*
* *
* @note This method should be used with some caution. The fact that this
* method @em copies the object passed to it means that the caller will be
* left holding a physically different object instance than the one contained
* inside this object. Changes made to the original object instance (such as
* resetting attribute values) will <em>not affect the instance in this
* object</em>. In addition, the caller should make sure to free the
* original object if it is no longer being used, or else a memory leak will
* result. Please see other methods on this class (particularly a
* corresponding method whose name begins with the word <code>create</code>)
* for alternatives that do not lead to these issues.
*
*
*
* @see createEventAssignment()
*/
public int addEventAssignment(EventAssignment ea)
{
int ret = libsbmlPINVOKE.Event_addEventAssignment(swigCPtr, EventAssignment.getCPtr(ea));
return ret;
}
public void test_ASTNode_create()
{
ASTNode n = new ASTNode();
EventAssignment ea = new EventAssignment(2,4);
assertTrue( n.getType() == libsbml.AST_UNKNOWN );
assertTrue( n.getCharacter() == '\0' );
assertTrue( n.getName() == null );
assertTrue( n.getInteger() == 0 );
assertTrue( n.getExponent() == 0 );
assertTrue( n.getNumChildren() == 0 );
assertTrue( n.getParentSBMLObject() == null );
ea = null;
n = null;
}
public void test_EventAssignment_parent_add()
{
Event e = new Event(2,4);
EventAssignment ea = new EventAssignment(2,4);
ea.setVariable("c");
ea.setMath(libsbml.parseFormula("K+L"));
e.addEventAssignment(ea);
ea = null;
ListOf lo = e.getListOfEventAssignments();
assertTrue( lo == e.getEventAssignment(0).getParentSBMLObject() );
assertTrue( e == lo.getParentSBMLObject() );
}
public void test_EventAssignment()
{
EventAssignment ea = new EventAssignment(2,4);
assertEquals( false, (ea.hasRequiredAttributes()) );
ea.setVariable("ea");
assertEquals( true, ea.hasRequiredAttributes() );
ea = null;
}
public void test_internal_consistency_check_99911_ea()
{
SBMLDocument d = new SBMLDocument(2,4);
d.setLevelAndVersion(2,1,false);
long errors;
Model m = d.createModel();
Compartment c = m.createCompartment();
c.setId("c");
c.setConstant(false);
Event e = m.createEvent();
ASTNode ast = libsbml.parseFormula("2*x");
Trigger t = e.createTrigger();
t.setMath(ast);
EventAssignment ea = new EventAssignment(2,4);
ea.setVariable("c");
ea.setSBOTerm(2);
ea.setMath(ast);
e.addEventAssignment(ea);
errors = d.checkInternalConsistency();
assertTrue( errors == 1 );
assertTrue( d.getError(0).getErrorId() == 21203 );
d = null;
}
public void test_EventAssignment()
{
EventAssignment ea = new EventAssignment(2,4);
assertEquals( false, (ea.hasRequiredElements()) );
ea.setMath(libsbml.parseFormula("fd"));
assertEquals( true, ea.hasRequiredElements() );
ea = null;
}
internal static HandleRef getCPtr(EventAssignment obj)
{
return((obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr);
}
/**
* Copy constructor; creates a copy of this EventAssignment.
*/
public EventAssignment(EventAssignment orig)
: this(libsbmlPINVOKE.new_EventAssignment__SWIG_2(EventAssignment.getCPtr(orig)), true)
{
if (libsbmlPINVOKE.SWIGPendingException.Pending) throw libsbmlPINVOKE.SWIGPendingException.Retrieve();
}
public void tearDown()
{
EA = null;
}
internal static HandleRef getCPtrAndDisown(EventAssignment obj)
{
HandleRef ptr = new HandleRef(null, IntPtr.Zero);
if (obj != null)
{
ptr = obj.swigCPtr;
obj.swigCMemOwn = false;
}
return ptr;
}
public void test_WriteSBML_Event_full()
{
string expected = "<event id=\"e\">\n" +
" <trigger>\n" +
" <math xmlns=\"http://www.w3.org/1998/Math/MathML\">\n" +
" <apply>\n" +
" <leq/>\n" +
" <ci> P1 </ci>\n" +
" <ci> t </ci>\n" +
" </apply>\n" +
" </math>\n" +
" </trigger>\n" +
" <listOfEventAssignments>\n" +
" <eventAssignment sboTerm=\"SBO:0000064\" variable=\"k2\">\n" +
" <math xmlns=\"http://www.w3.org/1998/Math/MathML\">\n" +
" <cn type=\"integer\"> 0 </cn>\n" +
" </math>\n" +
" </eventAssignment>\n" +
" </listOfEventAssignments>\n" +
"</event>";
D.setLevelAndVersion(2,3,false);
Event e = D.createModel().createEvent();
e.setId("e");
ASTNode node = libsbml.parseFormula("leq(P1,t)");
Trigger t = new Trigger ( 2,3 );
t.setMath(node);
ASTNode math = libsbml.parseFormula("0");
EventAssignment ea = new EventAssignment ( 2,3 );
ea.setVariable("k2");
ea.setMath(math);
ea.setSBOTerm(64);
e.setTrigger(t);
e.addEventAssignment(ea);
assertEquals( true, equals(expected,e.toSBML()) );
}
EventAssignment(EventAssignment orig) : this(libsbmlPINVOKE.new_EventAssignment__SWIG_2(EventAssignment.getCPtr(orig)), true)
{
if (libsbmlPINVOKE.SWIGPendingException.Pending)
{
throw libsbmlPINVOKE.SWIGPendingException.Retrieve();
}
}
public void test_EventAssignment_ancestor_add()
{
Event e = new Event(2,4);
EventAssignment ea = new EventAssignment(2,4);
ea.setVariable("c");
ea.setMath(libsbml.parseFormula("K+L"));
e.addEventAssignment(ea);
ea = null;
ListOf lo = e.getListOfEventAssignments();
EventAssignment obj = e.getEventAssignment(0);
assertTrue( obj.getAncestorOfType(libsbml.SBML_EVENT) == e );
assertTrue( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo );
assertTrue( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == null );
assertTrue( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == null );
}
public void test_EventAssignment_constructor()
{
SBase s;
try
{
s = new EventAssignment(2,1);
s = new EventAssignment(2,2);
s = new EventAssignment(2,3);
s = new EventAssignment(2,4);
s = new EventAssignment(3,1);
s = new EventAssignment(SN21);
s = new EventAssignment(SN22);
s = new EventAssignment(SN23);
s = new EventAssignment(SN24);
s = new EventAssignment(SN31);
}
catch (SBMLConstructorException e)
{
s = null;
}
assertTrue(s != null);
string msg = "";
try
{
s = new EventAssignment(1,1);
}
catch (SBMLConstructorException e)
{
msg = e.Message;
}
assertTrue(msg == ErrMsg);
msg = "";
try
{
s = new EventAssignment(1,2);
}
catch (SBMLConstructorException e)
{
msg = e.Message;
}
assertTrue(msg == ErrMsg);
msg = "";
try
{
s = new EventAssignment(9,9);
}
catch (SBMLConstructorException e)
{
msg = e.Message;
}
assertTrue(msg == ErrMsg);
msg = "";
try
{
s = new EventAssignment(SN11);
}
catch (SBMLConstructorException e)
{
msg = e.Message;
}
assertTrue(msg == ErrMsg);
msg = "";
try
{
s = new EventAssignment(SN12);
}
catch (SBMLConstructorException e)
{
msg = e.Message;
}
assertTrue(msg == ErrMsg);
msg = "";
try
{
s = new EventAssignment(SN99);
}
catch (SBMLConstructorException e)
{
msg = e.Message;
}
assertTrue(msg == ErrMsg);
}
public void test_EventAssignment_copyConstructor()
{
EventAssignment o1 = new EventAssignment(2,4);
o1.setVariable("c2");
assertTrue( o1.getVariable() == "c2" );
ASTNode node = new ASTNode(libsbml.AST_CONSTANT_PI);
o1.setMath(node);
node = null;
assertTrue( o1.getMath() != null );
EventAssignment o2 = new EventAssignment(o1);
assertTrue( o2.getVariable() == "c2" );
assertTrue( o2.getMath() != null );
assertTrue( o2.getParentSBMLObject() == o1.getParentSBMLObject() );
o2 = null;
o1 = null;
}