public void test_SBase_unsetAnnotationWithModelHistory()
{
ModelHistory h = new ModelHistory();
ModelCreator c = new ModelCreator();
Date dc;
Date dm;
string annt = "<annotation>\n" +
" <test:test xmlns:test=\"http://test.org/test\">this is a test node</test:test>\n" +
"</annotation>";
string annt_with_modelhistory = "<annotation>\n" +
" <test:test xmlns:test=\"http://test.org/test\">this is a test node</test:test>\n" +
" <rdf:RDF xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\" " +
"xmlns:dc=\"http://purl.org/dc/elements/1.1/\" " +
"xmlns:dcterms=\"http://purl.org/dc/terms/\" " +
"xmlns:vCard=\"http://www.w3.org/2001/vcard-rdf/3.0#\" " +
"xmlns:bqbiol=\"http://biomodels.net/biology-qualifiers/\" " +
"xmlns:bqmodel=\"http://biomodels.net/model-qualifiers/\">\n" +
" <rdf:Description rdf:about=\"#_000001\">\n" +
" <dc:creator>\n" +
" <rdf:Bag>\n" +
" <rdf:li rdf:parseType=\"Resource\">\n" +
" <vCard:N rdf:parseType=\"Resource\">\n" +
" <vCard:Family>Keating</vCard:Family>\n" +
" <vCard:Given>Sarah</vCard:Given>\n" +
" </vCard:N>\n" +
" <vCard:EMAIL>[email protected]</vCard:EMAIL>\n" +
" </rdf:li>\n" +
" </rdf:Bag>\n" +
" </dc:creator>\n" +
" <dcterms:created rdf:parseType=\"Resource\">\n" +
" <dcterms:W3CDTF>2005-12-29T12:15:45+02:00</dcterms:W3CDTF>\n" +
" </dcterms:created>\n" +
" <dcterms:modified rdf:parseType=\"Resource\">\n" +
" <dcterms:W3CDTF>2005-12-30T12:15:45+02:00</dcterms:W3CDTF>\n" +
" </dcterms:modified>\n" +
" </rdf:Description>\n" +
" </rdf:RDF>\n" +
"</annotation>";
S.setAnnotation(annt);
assertTrue( S.isSetAnnotation() == true );
assertTrue(( annt == S.getAnnotationString() ));
S.unsetAnnotation();
assertTrue( S.isSetAnnotation() == false );
assertTrue( S.getAnnotation() == null );
S.setAnnotation(annt);
S.setMetaId( "_000001");
c.setFamilyName("Keating");
c.setGivenName("Sarah");
c.setEmail("*****@*****.**");
h.addCreator(c);
dc = new Date(2005,12,29,12,15,45,1,2,0);
h.setCreatedDate(dc);
dm = new Date(2005,12,30,12,15,45,1,2,0);
h.setModifiedDate(dm);
S.setModelHistory(h);
assertTrue( S.isSetAnnotation() == true );
assertTrue(( annt_with_modelhistory == S.getAnnotationString() ));
S.unsetAnnotation();
assertTrue( S.isSetAnnotation() == false );
assertTrue( S.getAnnotation() == null );
c = null;
h = null;
}
public void test_RDFAnnotation2_modelWithHistoryAndCVTerms()
{
ModelHistory h = new ModelHistory();
ModelCreator c = new ModelCreator();
c.setFamilyName("Keating");
c.setGivenName("Sarah");
h.addCreator(c);
Date d = new Date(2008,11,17,18,37,0,0,0,0);
h.setCreatedDate(d);
h.setModifiedDate(d);
m2.unsetModelHistory();
m2.setModelHistory(h);
CVTerm cv = new CVTerm();
cv.setQualifierType(libsbml.BIOLOGICAL_QUALIFIER);
cv.setBiologicalQualifierType(libsbml.BQB_IS_VERSION_OF);
cv.addResource("http://www.geneontology.org/#GO:0005892");
m2.addCVTerm(cv);
XMLNode ann = RDFAnnotationParser.parseModelHistory(m2);
string expected = "<annotation>\n" +
" <rdf:RDF xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\" xmlns:dc=\"http://purl.org/dc/elements/1.1/\" xmlns:dcterms=\"http://purl.org/dc/terms/\" xmlns:vCard=\"http://www.w3.org/2001/vcard-rdf/3.0#\" xmlns:bqbiol=\"http://biomodels.net/biology-qualifiers/\" xmlns:bqmodel=\"http://biomodels.net/model-qualifiers/\">\n" +
" <rdf:Description rdf:about=\"#_000001\">\n" +
" <dc:creator rdf:parseType=\"Resource\">\n" +
" <rdf:Bag>\n" +
" <rdf:li rdf:parseType=\"Resource\">\n" +
" <vCard:N rdf:parseType=\"Resource\">\n" +
" <vCard:Family>Keating</vCard:Family>\n" +
" <vCard:Given>Sarah</vCard:Given>\n" +
" </vCard:N>\n" +
" </rdf:li>\n" +
" </rdf:Bag>\n" +
" </dc:creator>\n" +
" <dcterms:created rdf:parseType=\"Resource\">\n" +
" <dcterms:W3CDTF>2008-11-17T18:37:00Z</dcterms:W3CDTF>\n" +
" </dcterms:created>\n" +
" <dcterms:modified rdf:parseType=\"Resource\">\n" +
" <dcterms:W3CDTF>2008-11-17T18:37:00Z</dcterms:W3CDTF>\n" +
" </dcterms:modified>\n" +
" <bqbiol:isVersionOf>\n" +
" <rdf:Bag>\n" +
" <rdf:li rdf:resource=\"http://www.geneontology.org/#GO:0005892\"/>\n" +
" </rdf:Bag>\n" +
" </bqbiol:isVersionOf>\n" +
" </rdf:Description>\n" +
" </rdf:RDF>\n" +
"</annotation>";
if (ann != null);
{
assertEquals( true, equals(expected,ann.toXMLString()) );
}
{
}
}
public void test_L3_Species_ModelHistory()
{
ModelHistory history = new ModelHistory();
int i = (S).setModelHistory(history);
assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT );
assertEquals( false, (S).isSetModelHistory() );
ModelCreator mc = new ModelCreator();
Date date = new Date(2005,12,30,12,15,45,1,2,0);
mc.setFamilyName( "Keating");
mc.setGivenName( "Sarah");
mc.setEmail( "*****@*****.**");
mc.setOrganisation( "UH");
history.addCreator(mc);
history.setCreatedDate(date);
history.setModifiedDate(date);
i = (S).setModelHistory(history);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertEquals( true, (S).isSetModelHistory() );
i = (S).unsetModelHistory();
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertEquals( false, (S).isSetModelHistory() );
assertTrue( (S).getModelHistory() == null );
history = null;
}
public void test_Validation_ModelHistory3()
{
ModelHistory mh = new ModelHistory();
assertTrue( mh != null );
assertEquals( false, (mh.hasRequiredAttributes()) );
Date date = new Date(2007,12,30,12,15,45,1,2,0);
mh.setCreatedDate(date);
assertEquals( false, (mh.hasRequiredAttributes()) );
mh.setModifiedDate(date);
assertEquals( false, (mh.hasRequiredAttributes()) );
ModelCreator mc = new ModelCreator();
mc.setFamilyName("Keating");
mh.addCreator(mc);
assertEquals( false, (mh.hasRequiredAttributes()) );
mh = null;
}
public void test_ModelHistory_setModifiedDate()
{
ModelHistory history = new ModelHistory();
assertTrue( history != null );
assertTrue( history.isSetModifiedDate() == false );
Date date = new Date(2005,12,30,12,15,45,1,2,0);
history.setModifiedDate(date);
date = null;
assertTrue( history.isSetModifiedDate() == true );
Date newdate = history.getModifiedDate();
assertTrue( newdate.getYear() == 2005 );
assertTrue( newdate.getMonth() == 12 );
assertTrue( newdate.getDay() == 30 );
assertTrue( newdate.getHour() == 12 );
assertTrue( newdate.getMinute() == 15 );
assertTrue( newdate.getSecond() == 45 );
assertTrue( newdate.getSignOffset() == 1 );
assertTrue( newdate.getHoursOffset() == 2 );
assertTrue( newdate.getMinutesOffset() == 0 );
history = null;
}
public void test_ModelHistory_setModifiedDate2()
{
ModelHistory mh = new ModelHistory();
assertTrue( mh != null );
Date date = new Date(200,13,76,56,89,90,0,0,0);
int i = mh.setModifiedDate(date);
assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT );
assertTrue( mh.isSetModifiedDate() == false );
date = null;
mh = null;
}
public void test_ModelHistory_setModifiedDate1()
{
ModelHistory mh = new ModelHistory();
assertTrue( mh != null );
Date date = new Date("2005-12-30T12:15:32+02:00");
int i = mh.setModifiedDate(date);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( mh.isSetModifiedDate() == true );
assertTrue( date != mh.getModifiedDate() );
string dateChar = mh.getModifiedDate().getDateAsString();
assertTrue(( "2005-12-30T12:15:32+02:00" == dateChar ));
i = mh.setModifiedDate(null);
assertTrue( i == libsbml.LIBSBML_OPERATION_FAILED );
assertTrue( mh.isSetModifiedDate() == true );
date = null;
mh = null;
}
public void test_Model_setgetModelHistory()
{
ModelHistory history = new ModelHistory();
ModelCreator mc = new ModelCreator();
Date date = new Date(2005,12,30,12,15,45,1,2,0);
mc.setFamilyName( "Keating");
mc.setGivenName( "Sarah");
mc.setEmail( "*****@*****.**");
mc.setOrganisation( "UH");
history.addCreator(mc);
history.setCreatedDate(date);
history.setModifiedDate(date);
assertTrue( M.isSetModelHistory() == false );
M.setModelHistory(history);
assertTrue( M.isSetModelHistory() == true );
ModelCreator newMC = history.getCreator(0);
assertTrue( newMC != null );
assertTrue(( "Keating" == newMC.getFamilyName() ));
assertTrue(( "Sarah" == newMC.getGivenName() ));
assertTrue(( "*****@*****.**" == newMC.getEmail() ));
assertTrue(( "UH" == newMC.getOrganisation() ));
M.unsetModelHistory();
assertTrue( M.isSetModelHistory() == false );
history = null;
mc = null;
}
public void test_SBase_setModelHistory_Model()
{
ModelHistory history = new ModelHistory();
ModelCreator mc = new ModelCreator();
Date date = new Date(2005,12,30,12,15,45,1,2,0);
mc.setFamilyName( "Keating");
mc.setGivenName( "Sarah");
mc.setEmail( "*****@*****.**");
mc.setOrganisation( "UH");
history.addCreator(mc);
history.setCreatedDate(date);
history.setModifiedDate(date);
int i = S.setModelHistory(history);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
history = null;
}
public void test_SBase_setModelHistoryL3()
{
SBase sb = new Species(3,1);
ModelHistory mh = new ModelHistory();
ModelCreator mc = new ModelCreator();
Date date = new Date(2005,12,30,12,15,45,1,2,0);
mc.setFamilyName( "Keating");
mc.setGivenName( "Sarah");
mc.setEmail( "*****@*****.**");
mc.setOrganisation( "UH");
mh.addCreator(mc);
mh.setCreatedDate(date);
mh.setModifiedDate(date);
int i = sb.setModelHistory(mh);
assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS );
assertTrue( sb.isSetModelHistory() == true );
mh = sb.getModelHistory();
assertTrue( mh != null );
sb.unsetModelHistory();
mh = sb.getModelHistory();
assertTrue( sb.isSetModelHistory() == false );
assertTrue( mh == null );
mh = null;
}